miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 3' -56.3 NC_004684.1 + 12193 0.66 0.692333
Target:  5'- -cGUaGGCAUccaGCGCCGCCGCCa-- -3'
miRNA:   3'- acCAgCUGUAac-UGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 21426 0.66 0.681668
Target:  5'- cUGGcCGAgGUcaugGAgGCCGCCGUCg-- -3'
miRNA:   3'- -ACCaGCUgUAa---CUgCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 18652 0.66 0.681668
Target:  5'- cGGUgaCGACG-UGACcaucguGCCGCCGCUg-- -3'
miRNA:   3'- aCCA--GCUGUaACUG------CGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 63184 0.66 0.681668
Target:  5'- gGGUCGACuc-GACGCgGCCGa---- -3'
miRNA:   3'- aCCAGCUGuaaCUGCGgCGGCggaac -5'
19126 3' -56.3 NC_004684.1 + 36751 0.67 0.670956
Target:  5'- ---cCGGCGcUGACGCCGCCaggGCCg-- -3'
miRNA:   3'- accaGCUGUaACUGCGGCGG---CGGaac -5'
19126 3' -56.3 NC_004684.1 + 28894 0.67 0.670956
Target:  5'- cGG-CGcGCcgUGGCGaCCGCCGCUg-- -3'
miRNA:   3'- aCCaGC-UGuaACUGC-GGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 51705 0.67 0.670956
Target:  5'- cGGU-GGCGUcGGUGCCGCCGCUg-- -3'
miRNA:   3'- aCCAgCUGUAaCUGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 55286 0.67 0.670956
Target:  5'- gGGUCGGgGguugcgUGAUgGCCGCCGCg--- -3'
miRNA:   3'- aCCAGCUgUa-----ACUG-CGGCGGCGgaac -5'
19126 3' -56.3 NC_004684.1 + 49330 0.67 0.670956
Target:  5'- gUGGUCGGCAccgGGCaGUCGUccuCGCCUUc -3'
miRNA:   3'- -ACCAGCUGUaa-CUG-CGGCG---GCGGAAc -5'
19126 3' -56.3 NC_004684.1 + 25439 0.67 0.669883
Target:  5'- cGGUCcuccaGGcCGUUGGUGCCGCCguugaccGCCUUGg -3'
miRNA:   3'- aCCAG-----CU-GUAACUGCGGCGG-------CGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 44428 0.67 0.66021
Target:  5'- aUGG-CGGCGUUGGCGC-GCUucugGCCUUc -3'
miRNA:   3'- -ACCaGCUGUAACUGCGgCGG----CGGAAc -5'
19126 3' -56.3 NC_004684.1 + 66248 0.67 0.66021
Target:  5'- cGGUCGGCAcgcccgGcAUGCCGUgGCCg-- -3'
miRNA:   3'- aCCAGCUGUaa----C-UGCGGCGgCGGaac -5'
19126 3' -56.3 NC_004684.1 + 61297 0.67 0.649439
Target:  5'- gGGUCGAUuuccGGCagcaCCGCCGCCg-- -3'
miRNA:   3'- aCCAGCUGuaa-CUGc---GGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 45096 0.67 0.649439
Target:  5'- gGGuUCGGCAccGcCGCCGCgcggGCCUUGg -3'
miRNA:   3'- aCC-AGCUGUaaCuGCGGCGg---CGGAAC- -5'
19126 3' -56.3 NC_004684.1 + 42537 0.67 0.64836
Target:  5'- gUGGUCGGCGUgcugacGGCGUUcggcuucggcgugGCCGCCa-- -3'
miRNA:   3'- -ACCAGCUGUAa-----CUGCGG-------------CGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 46414 0.67 0.638652
Target:  5'- gGGcCGACcu--GCGCCGCCGCUc-- -3'
miRNA:   3'- aCCaGCUGuaacUGCGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 42016 0.67 0.638652
Target:  5'- cGG-CGGCGUaggcgcUGACcggguccaucagGCCGCCGCCa-- -3'
miRNA:   3'- aCCaGCUGUA------ACUG------------CGGCGGCGGaac -5'
19126 3' -56.3 NC_004684.1 + 6798 0.67 0.638652
Target:  5'- cUGGaCGACGgccacuacGACGCCGUCgGCCUg- -3'
miRNA:   3'- -ACCaGCUGUaa------CUGCGGCGG-CGGAac -5'
19126 3' -56.3 NC_004684.1 + 66458 0.67 0.62786
Target:  5'- gUGG-CGGCGUUGucuccACGCCGCCaCCcggUGg -3'
miRNA:   3'- -ACCaGCUGUAAC-----UGCGGCGGcGGa--AC- -5'
19126 3' -56.3 NC_004684.1 + 9987 0.67 0.62786
Target:  5'- cGGUCGAg--UGAuaCGCUgGCCGCCUg- -3'
miRNA:   3'- aCCAGCUguaACU--GCGG-CGGCGGAac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.