miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19126 5' -60.8 NC_004684.1 + 30093 0.66 0.475078
Target:  5'- aUGCUGGaCGCGcucUUGGCGaUGUCcACCa -3'
miRNA:   3'- -ACGACCcGCGCa--AGCCGC-ACGGcUGG- -5'
19126 5' -60.8 NC_004684.1 + 23214 0.66 0.474119
Target:  5'- gUGCUGGcGCGCGccggguucaUCGcCGUGCCGcaguauugcgagcGCCu -3'
miRNA:   3'- -ACGACC-CGCGCa--------AGCcGCACGGC-------------UGG- -5'
19126 5' -60.8 NC_004684.1 + 9541 0.66 0.46649
Target:  5'- aGCUGGuGCGCcgGUUggagcCGGUGcgccgcgaacacgugGCCGACCu -3'
miRNA:   3'- aCGACC-CGCG--CAA-----GCCGCa--------------CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 63534 0.66 0.465541
Target:  5'- aGCUcgcGGGCGUGgcgcUCGGCcuccucgGCCGcuGCCa -3'
miRNA:   3'- aCGA---CCCGCGCa---AGCCGca-----CGGC--UGG- -5'
19126 5' -60.8 NC_004684.1 + 4023 0.66 0.464592
Target:  5'- gGCU-GGCGCGUcggccgcUCGGUGcGCUGGgCg -3'
miRNA:   3'- aCGAcCCGCGCA-------AGCCGCaCGGCUgG- -5'
19126 5' -60.8 NC_004684.1 + 55645 0.67 0.458924
Target:  5'- gGCUGGcGUGCGUggaggagggccuggCGGCGcaccagcUGCUgGACCu -3'
miRNA:   3'- aCGACC-CGCGCAa-------------GCCGC-------ACGG-CUGG- -5'
19126 5' -60.8 NC_004684.1 + 58654 0.67 0.457043
Target:  5'- cGCcGGGCGCGg-CGGCGaacaucgggaucagcGCCG-CCa -3'
miRNA:   3'- aCGaCCCGCGCaaGCCGCa--------------CGGCuGG- -5'
19126 5' -60.8 NC_004684.1 + 6834 0.67 0.456104
Target:  5'- aGCUGGuCGaGUUCGaGgGUGUCGACg -3'
miRNA:   3'- aCGACCcGCgCAAGC-CgCACGGCUGg -5'
19126 5' -60.8 NC_004684.1 + 60056 0.67 0.456104
Target:  5'- cGCacucgUGGcGCGCGgcccggCGGCccGUGCgGGCCu -3'
miRNA:   3'- aCG-----ACC-CGCGCaa----GCCG--CACGgCUGG- -5'
19126 5' -60.8 NC_004684.1 + 10590 0.67 0.449559
Target:  5'- gGCUGGuucggcgcgcgagguGCGCaacugccguugccGUaUgGGCGUGCUGGCCg -3'
miRNA:   3'- aCGACC---------------CGCG-------------CA-AgCCGCACGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 66736 0.67 0.446771
Target:  5'- cGCUGucguGCGCG-UCGGUGUccuuggggucGCCGugCu -3'
miRNA:   3'- aCGACc---CGCGCaAGCCGCA----------CGGCugG- -5'
19126 5' -60.8 NC_004684.1 + 33555 0.67 0.437545
Target:  5'- cUGUUGaGGCGCGgcgUCGacauccCGUgGUCGACCa -3'
miRNA:   3'- -ACGAC-CCGCGCa--AGCc-----GCA-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 30630 0.67 0.437545
Target:  5'- gGCaccGGGCGCGgcccuggCGGCGUcagcGCCGGg- -3'
miRNA:   3'- aCGa--CCCGCGCaa-----GCCGCA----CGGCUgg -5'
19126 5' -60.8 NC_004684.1 + 54967 0.67 0.42843
Target:  5'- cGCgGGGUGaaCGggUGGCc-GCCGACCa -3'
miRNA:   3'- aCGaCCCGC--GCaaGCCGcaCGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 57110 0.67 0.42843
Target:  5'- -uCU-GGCGCGacacCGGCGUcGCUGGCCa -3'
miRNA:   3'- acGAcCCGCGCaa--GCCGCA-CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 46336 0.67 0.425717
Target:  5'- gGCUGGcgaacacgaugggaGCGUGguggUCGuCGUGCuCGGCCa -3'
miRNA:   3'- aCGACC--------------CGCGCa---AGCcGCACG-GCUGG- -5'
19126 5' -60.8 NC_004684.1 + 39309 0.67 0.419428
Target:  5'- gUGC-GGGuCGCG--CGGCG-GCCcGGCCa -3'
miRNA:   3'- -ACGaCCC-GCGCaaGCCGCaCGG-CUGG- -5'
19126 5' -60.8 NC_004684.1 + 49934 0.67 0.419428
Target:  5'- aGCaGGGCGCGUaCGGUGUugagcuugucgcGCUcggucaucaGACCg -3'
miRNA:   3'- aCGaCCCGCGCAaGCCGCA------------CGG---------CUGG- -5'
19126 5' -60.8 NC_004684.1 + 4767 0.67 0.407898
Target:  5'- cGCcuucGuGCGCGUcgccagcaagcgccUCGGCGcggugGCCGACCg -3'
miRNA:   3'- aCGa---CcCGCGCA--------------AGCCGCa----CGGCUGG- -5'
19126 5' -60.8 NC_004684.1 + 24522 0.68 0.401772
Target:  5'- gGCcGGGCGUG--CGGCGgccugGuuGGCCc -3'
miRNA:   3'- aCGaCCCGCGCaaGCCGCa----CggCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.