miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19127 3' -59.8 NC_004684.1 + 41652 0.66 0.591948
Target:  5'- -cCUCCGGugcggcguacgaagGCCGGGccGACCUCGg -3'
miRNA:   3'- gaGAGGCCca------------UGGCCCuuCUGGGGCg -5'
19127 3' -59.8 NC_004684.1 + 52169 0.66 0.590914
Target:  5'- gCUgUCCGGGUaggcgaACCGGGccaguAGGACCguauCgGCa -3'
miRNA:   3'- -GAgAGGCCCA------UGGCCC-----UUCUGG----GgCG- -5'
19127 3' -59.8 NC_004684.1 + 8989 0.66 0.570306
Target:  5'- -gUUCCGGcgGCCGGGccAAGGCCUccaCGCg -3'
miRNA:   3'- gaGAGGCCcaUGGCCC--UUCUGGG---GCG- -5'
19127 3' -59.8 NC_004684.1 + 47009 0.66 0.560067
Target:  5'- ---aCCGGGUGCCgucgGGGAAcgacuGGCCUuCGCa -3'
miRNA:   3'- gagaGGCCCAUGG----CCCUU-----CUGGG-GCG- -5'
19127 3' -59.8 NC_004684.1 + 605 0.66 0.560067
Target:  5'- -cCUCCGGGccgccugACCuGGAcGACCUgGCc -3'
miRNA:   3'- gaGAGGCCCa------UGGcCCUuCUGGGgCG- -5'
19127 3' -59.8 NC_004684.1 + 58927 0.66 0.560067
Target:  5'- gCUgUCCaGGUuggcgcgcACCGGGGAGucagguucccugGCCCgGCg -3'
miRNA:   3'- -GAgAGGcCCA--------UGGCCCUUC------------UGGGgCG- -5'
19127 3' -59.8 NC_004684.1 + 62863 0.66 0.549879
Target:  5'- -cCUCCGGGgucugccCCGGaacAGGAUCCCGg -3'
miRNA:   3'- gaGAGGCCCau-----GGCCc--UUCUGGGGCg -5'
19127 3' -59.8 NC_004684.1 + 53148 0.66 0.539749
Target:  5'- ---aCCGGGUccACCGGGuccggcgugAAGGCCuCCGg -3'
miRNA:   3'- gagaGGCCCA--UGGCCC---------UUCUGG-GGCg -5'
19127 3' -59.8 NC_004684.1 + 1740 0.66 0.539749
Target:  5'- aCUCgggaCCGGGUAggUCGGGAccGGAgCUgCGCg -3'
miRNA:   3'- -GAGa---GGCCCAU--GGCCCU--UCU-GGgGCG- -5'
19127 3' -59.8 NC_004684.1 + 54679 0.66 0.53773
Target:  5'- -cCUaCCGGGgagccaccagccACCGGGAAGGCCagaCGg -3'
miRNA:   3'- gaGA-GGCCCa-----------UGGCCCUUCUGGg--GCg -5'
19127 3' -59.8 NC_004684.1 + 41147 0.67 0.529683
Target:  5'- -cCUCUGGGguacGCCGcGccGGACCCgCGCg -3'
miRNA:   3'- gaGAGGCCCa---UGGC-CcuUCUGGG-GCG- -5'
19127 3' -59.8 NC_004684.1 + 46118 0.67 0.529683
Target:  5'- ---gCCGGGcgcgcgUGCCGGGGugguuGACCUgGCg -3'
miRNA:   3'- gagaGGCCC------AUGGCCCUu----CUGGGgCG- -5'
19127 3' -59.8 NC_004684.1 + 66856 0.67 0.529683
Target:  5'- -cCUCCaGGccuucGCCGGGuccAGGCCuuGCa -3'
miRNA:   3'- gaGAGGcCCa----UGGCCCu--UCUGGggCG- -5'
19127 3' -59.8 NC_004684.1 + 59435 0.67 0.528679
Target:  5'- --gUCCGGGUggagcugcccaugGCCuugcGGAAGGCCuuGCc -3'
miRNA:   3'- gagAGGCCCA-------------UGGc---CCUUCUGGggCG- -5'
19127 3' -59.8 NC_004684.1 + 10521 0.67 0.519686
Target:  5'- --gUgCGGGUGCCaGGGugcgcuGACCUCGUg -3'
miRNA:   3'- gagAgGCCCAUGG-CCCuu----CUGGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 45165 0.67 0.498944
Target:  5'- aUCgCgCGGGUGCCGucgcgcaGGGAGGCCaCCuGCg -3'
miRNA:   3'- gAGaG-GCCCAUGGC-------CCUUCUGG-GG-CG- -5'
19127 3' -59.8 NC_004684.1 + 21070 0.67 0.484356
Target:  5'- gCUgaCCGGGcACCugggccggucagugcGGGAAGA-CCCGCa -3'
miRNA:   3'- -GAgaGGCCCaUGG---------------CCCUUCUgGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 5467 0.68 0.461453
Target:  5'- ----gCGGGUGCCGuGGcccGcACCCCGCg -3'
miRNA:   3'- gagagGCCCAUGGC-CCuu-C-UGGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 51686 0.68 0.451148
Target:  5'- gUCUCCGGGagcacgaUGCCGGuGGcgucGGuGCCgCCGCu -3'
miRNA:   3'- gAGAGGCCC-------AUGGCC-CU----UC-UGG-GGCG- -5'
19127 3' -59.8 NC_004684.1 + 4039 0.68 0.442812
Target:  5'- gCUCggugcgCUGGGcggucACCGGGGAGACCaCCu- -3'
miRNA:   3'- -GAGa-----GGCCCa----UGGCCCUUCUGG-GGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.