miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19127 3' -59.8 NC_004684.1 + 3904 1.11 0.000432
Target:  5'- cCUCUCCGGGUACCGGGAAGACCCCGCu -3'
miRNA:   3'- -GAGAGGCCCAUGGCCCUUCUGGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 41652 0.66 0.591948
Target:  5'- -cCUCCGGugcggcguacgaagGCCGGGccGACCUCGg -3'
miRNA:   3'- gaGAGGCCca------------UGGCCCuuCUGGGGCg -5'
19127 3' -59.8 NC_004684.1 + 52169 0.66 0.590914
Target:  5'- gCUgUCCGGGUaggcgaACCGGGccaguAGGACCguauCgGCa -3'
miRNA:   3'- -GAgAGGCCCA------UGGCCC-----UUCUGG----GgCG- -5'
19127 3' -59.8 NC_004684.1 + 47009 0.66 0.560067
Target:  5'- ---aCCGGGUGCCgucgGGGAAcgacuGGCCUuCGCa -3'
miRNA:   3'- gagaGGCCCAUGG----CCCUU-----CUGGG-GCG- -5'
19127 3' -59.8 NC_004684.1 + 605 0.66 0.560067
Target:  5'- -cCUCCGGGccgccugACCuGGAcGACCUgGCc -3'
miRNA:   3'- gaGAGGCCCa------UGGcCCUuCUGGGgCG- -5'
19127 3' -59.8 NC_004684.1 + 62863 0.66 0.549879
Target:  5'- -cCUCCGGGgucugccCCGGaacAGGAUCCCGg -3'
miRNA:   3'- gaGAGGCCCau-----GGCCc--UUCUGGGGCg -5'
19127 3' -59.8 NC_004684.1 + 53148 0.66 0.539749
Target:  5'- ---aCCGGGUccACCGGGuccggcgugAAGGCCuCCGg -3'
miRNA:   3'- gagaGGCCCA--UGGCCC---------UUCUGG-GGCg -5'
19127 3' -59.8 NC_004684.1 + 54679 0.66 0.53773
Target:  5'- -cCUaCCGGGgagccaccagccACCGGGAAGGCCagaCGg -3'
miRNA:   3'- gaGA-GGCCCa-----------UGGCCCUUCUGGg--GCg -5'
19127 3' -59.8 NC_004684.1 + 41147 0.67 0.529683
Target:  5'- -cCUCUGGGguacGCCGcGccGGACCCgCGCg -3'
miRNA:   3'- gaGAGGCCCa---UGGC-CcuUCUGGG-GCG- -5'
19127 3' -59.8 NC_004684.1 + 39171 0.73 0.221508
Target:  5'- -gUUCCGGGUGCaauGGGAuGACUCCaGCg -3'
miRNA:   3'- gaGAGGCCCAUGg--CCCUuCUGGGG-CG- -5'
19127 3' -59.8 NC_004684.1 + 63123 0.73 0.232768
Target:  5'- gUCUCCGGGUagaggccauuccGCCGGGcaccggcucAGACUCCGa -3'
miRNA:   3'- gAGAGGCCCA------------UGGCCCu--------UCUGGGGCg -5'
19127 3' -59.8 NC_004684.1 + 20024 0.72 0.276
Target:  5'- ---gCCGuGGUGCCu-GAAGACCCCGCc -3'
miRNA:   3'- gagaGGC-CCAUGGccCUUCUGGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 37565 0.71 0.289478
Target:  5'- ---cCCGGuGUACCGGGAgcuggaGGugCCCGg -3'
miRNA:   3'- gagaGGCC-CAUGGCCCU------UCugGGGCg -5'
19127 3' -59.8 NC_004684.1 + 48082 0.68 0.424602
Target:  5'- -gUUCCGGcGUcgGCCGGGcAAGcacgaugucGCCCUGCa -3'
miRNA:   3'- gaGAGGCC-CA--UGGCCC-UUC---------UGGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 21070 0.67 0.484356
Target:  5'- gCUgaCCGGGcACCugggccggucagugcGGGAAGA-CCCGCa -3'
miRNA:   3'- -GAgaGGCCCaUGG---------------CCCUUCUgGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 8989 0.66 0.570306
Target:  5'- -gUUCCGGcgGCCGGGccAAGGCCUccaCGCg -3'
miRNA:   3'- gaGAGGCCcaUGGCCC--UUCUGGG---GCG- -5'
19127 3' -59.8 NC_004684.1 + 19263 0.72 0.276
Target:  5'- aUCaCCGGGccgACCGGGAcgguGGACCCgaUGCa -3'
miRNA:   3'- gAGaGGCCCa--UGGCCCU----UCUGGG--GCG- -5'
19127 3' -59.8 NC_004684.1 + 7300 0.69 0.381108
Target:  5'- -aCUUCGGGguggcCCGGuGAAGG-CCCGCa -3'
miRNA:   3'- gaGAGGCCCau---GGCC-CUUCUgGGGCG- -5'
19127 3' -59.8 NC_004684.1 + 24007 0.69 0.392984
Target:  5'- uUCUCCGGGccgucgggcauuuCCGGGGAGAagaUCaCGCa -3'
miRNA:   3'- gAGAGGCCCau-----------GGCCCUUCUg--GG-GCG- -5'
19127 3' -59.8 NC_004684.1 + 64811 0.69 0.396421
Target:  5'- aCUCggUCGGGUcgggcacACCGGccucggcGAAGGCCuCCGCg -3'
miRNA:   3'- -GAGa-GGCCCA-------UGGCC-------CUUCUGG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.