miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19127 5' -57.4 NC_004684.1 + 32908 0.66 0.688203
Target:  5'- cGGGGGUGuccuCGg---CgGUGCCGGACc -3'
miRNA:   3'- aCCUCCACu---GCaagaGgCGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 5802 0.66 0.667018
Target:  5'- gUGcGAGGUcggGACGUg--CCGCACCGuGGa -3'
miRNA:   3'- -AC-CUCCA---CUGCAagaGGCGUGGC-CUg -5'
19127 5' -57.4 NC_004684.1 + 23994 0.66 0.667018
Target:  5'- cGGcGGcGAccCGUUCUCCGgGCCgucGGGCa -3'
miRNA:   3'- aCCuCCaCU--GCAAGAGGCgUGG---CCUG- -5'
19127 5' -57.4 NC_004684.1 + 52435 0.66 0.667018
Target:  5'- cGGGGGUcucGAUGUcggCCGCcACCGGGa -3'
miRNA:   3'- aCCUCCA---CUGCAagaGGCG-UGGCCUg -5'
19127 5' -57.4 NC_004684.1 + 58759 0.66 0.656375
Target:  5'- cGGGGGUGccgaggaucgGCGgug-CCgguGCACCGGGCu -3'
miRNA:   3'- aCCUCCAC----------UGCaagaGG---CGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 9974 0.66 0.645711
Target:  5'- aUGGAGGcuucGACGcgCUCgGCaucccguuGCCGGAa -3'
miRNA:   3'- -ACCUCCa---CUGCaaGAGgCG--------UGGCCUg -5'
19127 5' -57.4 NC_004684.1 + 8973 0.66 0.635034
Target:  5'- cGGAGGcaacGGCGgggUUCCGgCGgCCGGGCc -3'
miRNA:   3'- aCCUCCa---CUGCaa-GAGGC-GU-GGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 34127 0.66 0.635034
Target:  5'- gUGGcGGUcACGUUCcucgCCGCcUCGGGCg -3'
miRNA:   3'- -ACCuCCAcUGCAAGa---GGCGuGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 8520 0.67 0.624355
Target:  5'- gGGAuuGUGGCGUgCUgUGCggGCCGGACg -3'
miRNA:   3'- aCCUc-CACUGCAaGAgGCG--UGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 43003 0.67 0.624355
Target:  5'- cUGGAGGUGgggGCGUUgCUuuGUGcCCGGuCa -3'
miRNA:   3'- -ACCUCCAC---UGCAA-GAggCGU-GGCCuG- -5'
19127 5' -57.4 NC_004684.1 + 41965 0.67 0.613683
Target:  5'- cUGGAGGaccgcaaGGCGUUCUaugcCCGCGCgGuGGCc -3'
miRNA:   3'- -ACCUCCa------CUGCAAGA----GGCGUGgC-CUG- -5'
19127 5' -57.4 NC_004684.1 + 41910 0.67 0.586026
Target:  5'- cUGGcccuGGUGAUGagCUCCaccaggucgcugaugGCACCGGAg -3'
miRNA:   3'- -ACCu---CCACUGCaaGAGG---------------CGUGGCCUg -5'
19127 5' -57.4 NC_004684.1 + 24499 0.68 0.559662
Target:  5'- --cAGGUGGCGgUCUCgGUgccagagGCCGGGCg -3'
miRNA:   3'- accUCCACUGCaAGAGgCG-------UGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 60446 0.68 0.539848
Target:  5'- ---cGGUGGCGaacUUCUUCaCGCCGGACa -3'
miRNA:   3'- accuCCACUGC---AAGAGGcGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 49640 0.68 0.519254
Target:  5'- ---cGGUGACGaggCgguuggCCGCGCCGGAUu -3'
miRNA:   3'- accuCCACUGCaa-Ga-----GGCGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 43331 0.69 0.466326
Target:  5'- uUGuAGGUGAcCGUgccgucgggguugaUCaCCGCGCCGGGCa -3'
miRNA:   3'- -ACcUCCACU-GCA--------------AGaGGCGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 49301 0.69 0.463412
Target:  5'- cGGAGGUGGCcaccgagaagaucgaGUcCguggUCgGCACCGGGCa -3'
miRNA:   3'- aCCUCCACUG---------------CAaG----AGgCGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 10562 0.69 0.459542
Target:  5'- gGGAGGcccUGGCGUUCcCCGCcgauCCGG-Cu -3'
miRNA:   3'- aCCUCC---ACUGCAAGaGGCGu---GGCCuG- -5'
19127 5' -57.4 NC_004684.1 + 35429 0.69 0.459542
Target:  5'- gGGAGGcGAUGg--UCC-CGCCGGACa -3'
miRNA:   3'- aCCUCCaCUGCaagAGGcGUGGCCUG- -5'
19127 5' -57.4 NC_004684.1 + 61067 0.7 0.449942
Target:  5'- cGGGccGGUGGCGgcauugUCUCCGCaacgccgccACCGGuCg -3'
miRNA:   3'- aCCU--CCACUGCa-----AGAGGCG---------UGGCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.