miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19128 3' -57.6 NC_004684.1 + 12900 0.66 0.626683
Target:  5'- gCGCUCGCCGCCagCGGUGccGGUGCGc-- -3'
miRNA:   3'- -GUGAGCGGUGG--GCCACa-CUGCGCuuu -5'
19128 3' -57.6 NC_004684.1 + 41585 0.66 0.615934
Target:  5'- gGC-CGCCACCCGGccaguugGUGACGa---- -3'
miRNA:   3'- gUGaGCGGUGGGCCa------CACUGCgcuuu -5'
19128 3' -57.6 NC_004684.1 + 65767 0.66 0.615933
Target:  5'- gGC-CGCCGCgcgCCGGUG-GGCGCGc-- -3'
miRNA:   3'- gUGaGCGGUG---GGCCACaCUGCGCuuu -5'
19128 3' -57.6 NC_004684.1 + 44466 0.66 0.615933
Target:  5'- aCGCUgGCCACCUGcGUGc-GCGUGGAc -3'
miRNA:   3'- -GUGAgCGGUGGGC-CACacUGCGCUUu -5'
19128 3' -57.6 NC_004684.1 + 9729 0.66 0.615933
Target:  5'- gGC-CGCUACCCGGUGaguccaucGACcGCGAc- -3'
miRNA:   3'- gUGaGCGGUGGGCCACa-------CUG-CGCUuu -5'
19128 3' -57.6 NC_004684.1 + 31257 0.67 0.594484
Target:  5'- uCACUgCGCC-CCCacagGUGugGCGAAGg -3'
miRNA:   3'- -GUGA-GCGGuGGGcca-CACugCGCUUU- -5'
19128 3' -57.6 NC_004684.1 + 54278 0.68 0.520763
Target:  5'- gCGC-CGCCACCCGGccggggGUG-CGCGc-- -3'
miRNA:   3'- -GUGaGCGGUGGGCCa-----CACuGCGCuuu -5'
19128 3' -57.6 NC_004684.1 + 64648 0.68 0.494255
Target:  5'- cCACUCGaCGCCgaacguguggccgugCGGUGUGGCGCa--- -3'
miRNA:   3'- -GUGAGCgGUGG---------------GCCACACUGCGcuuu -5'
19128 3' -57.6 NC_004684.1 + 47084 0.68 0.490231
Target:  5'- cCGC-CGCCGCCaUGGUGUcGGCGCa--- -3'
miRNA:   3'- -GUGaGCGGUGG-GCCACA-CUGCGcuuu -5'
19128 3' -57.6 NC_004684.1 + 22538 0.68 0.49023
Target:  5'- -cCUCGCUcuGCCCGGUGUGuuCGCc--- -3'
miRNA:   3'- guGAGCGG--UGGGCCACACu-GCGcuuu -5'
19128 3' -57.6 NC_004684.1 + 42564 0.68 0.479244
Target:  5'- cCGCU-GCCGCCCuGUGUGguguccuGCGCGAu- -3'
miRNA:   3'- -GUGAgCGGUGGGcCACAC-------UGCGCUuu -5'
19128 3' -57.6 NC_004684.1 + 30598 0.69 0.460558
Target:  5'- --aUCGCCGCCCGcGUGUGG-GCGu-- -3'
miRNA:   3'- gugAGCGGUGGGC-CACACUgCGCuuu -5'
19128 3' -57.6 NC_004684.1 + 47942 0.7 0.404241
Target:  5'- cCAC-CGCCGCCCGGgcaugGGCGCa--- -3'
miRNA:   3'- -GUGaGCGGUGGGCCaca--CUGCGcuuu -5'
19128 3' -57.6 NC_004684.1 + 22332 0.71 0.327626
Target:  5'- gGCcCGCCACCCGGUacaggcgGUGGCgGCGGc- -3'
miRNA:   3'- gUGaGCGGUGGGCCA-------CACUG-CGCUuu -5'
19128 3' -57.6 NC_004684.1 + 66475 0.72 0.32066
Target:  5'- aCGC-CGCCACCCGGUGgcggcuaggccuUGGCgGCGGc- -3'
miRNA:   3'- -GUGaGCGGUGGGCCAC------------ACUG-CGCUuu -5'
19128 3' -57.6 NC_004684.1 + 919 0.72 0.291046
Target:  5'- aGC-CGCCACCgGGUGgcGGCGUGGAGa -3'
miRNA:   3'- gUGaGCGGUGGgCCACa-CUGCGCUUU- -5'
19128 3' -57.6 NC_004684.1 + 16254 0.72 0.290334
Target:  5'- uUACgUCGCuCGCCCGGUGUucgcgccgggcccGACGCGGc- -3'
miRNA:   3'- -GUG-AGCG-GUGGGCCACA-------------CUGCGCUuu -5'
19128 3' -57.6 NC_004684.1 + 66783 0.75 0.193832
Target:  5'- gUACUCGCCGCCCu-UGUGGCuGCGGAAc -3'
miRNA:   3'- -GUGAGCGGUGGGccACACUG-CGCUUU- -5'
19128 3' -57.6 NC_004684.1 + 10395 0.76 0.179114
Target:  5'- gCGCUCGUC-CCCGGcgGUGACGCGc-- -3'
miRNA:   3'- -GUGAGCGGuGGGCCa-CACUGCGCuuu -5'
19128 3' -57.6 NC_004684.1 + 42099 0.79 0.104158
Target:  5'- cCGC-CGCCGCCUGGUGUGGC-CGGAAg -3'
miRNA:   3'- -GUGaGCGGUGGGCCACACUGcGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.