miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19128 5' -62.5 NC_004684.1 + 52397 0.66 0.396963
Target:  5'- gACCUGCUCG-CGCAGGc--GCAGGUu -3'
miRNA:   3'- gUGGACGGGCgGCGUCCuccCGUUCA- -5'
19128 5' -62.5 NC_004684.1 + 46419 0.66 0.396963
Target:  5'- gACCUGCgCCGCCGCuccGAccGGGUuguAGUc -3'
miRNA:   3'- gUGGACG-GGCGGCGuc-CU--CCCGu--UCA- -5'
19128 5' -62.5 NC_004684.1 + 14392 0.66 0.388335
Target:  5'- aCACCggGCCguCGCCGCAGGAGaugcugcGCGAa- -3'
miRNA:   3'- -GUGGa-CGG--GCGGCGUCCUCc------CGUUca -5'
19128 5' -62.5 NC_004684.1 + 64415 0.66 0.388335
Target:  5'- gCGCC-GCCCGCCGUcc-AGGGCAc-- -3'
miRNA:   3'- -GUGGaCGGGCGGCGuccUCCCGUuca -5'
19128 5' -62.5 NC_004684.1 + 65694 0.66 0.371452
Target:  5'- uGCCUGCCaGgUGCAGGuucGGGCccGGGUg -3'
miRNA:   3'- gUGGACGGgCgGCGUCCu--CCCG--UUCA- -5'
19128 5' -62.5 NC_004684.1 + 55893 0.66 0.366486
Target:  5'- gACCUGCCCGauggccuguuaCCGCcggagcugguggccaAGGuggaccGGGGCGAGg -3'
miRNA:   3'- gUGGACGGGC-----------GGCG---------------UCC------UCCCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 4596 0.66 0.355076
Target:  5'- cCGCCUGCCCGgcaaccCCGCc---GGGCAGGc -3'
miRNA:   3'- -GUGGACGGGC------GGCGuccuCCCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 18614 0.67 0.347082
Target:  5'- uCAUCgGCCCGCC-CGGcGucGGCAAGUc -3'
miRNA:   3'- -GUGGaCGGGCGGcGUC-CucCCGUUCA- -5'
19128 5' -62.5 NC_004684.1 + 8943 0.67 0.339216
Target:  5'- gCGCCUGCauauccugCCGCCGguGGAGaugcuguGCGAGc -3'
miRNA:   3'- -GUGGACG--------GGCGGCguCCUCc------CGUUCa -5'
19128 5' -62.5 NC_004684.1 + 62765 0.67 0.323876
Target:  5'- gACUUGCCCuCCuGC-GGcGGGCAGGUg -3'
miRNA:   3'- gUGGACGGGcGG-CGuCCuCCCGUUCA- -5'
19128 5' -62.5 NC_004684.1 + 47794 0.68 0.287813
Target:  5'- cCGCCaGCaCCucgGCCGCcGGAcuGGGCAGGUg -3'
miRNA:   3'- -GUGGaCG-GG---CGGCGuCCU--CCCGUUCA- -5'
19128 5' -62.5 NC_004684.1 + 18212 0.68 0.280991
Target:  5'- uCGCUgGCCaUGCCGCAcuGGGGCAAGg -3'
miRNA:   3'- -GUGGaCGG-GCGGCGUccUCCCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 9901 0.69 0.248799
Target:  5'- gCACCUGCgUGCgGCGcuugucgacGGuGGGCAGGa -3'
miRNA:   3'- -GUGGACGgGCGgCGU---------CCuCCCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 10151 0.69 0.242738
Target:  5'- uGCC-GCCCGCC-CAGGuGGGGCGu-- -3'
miRNA:   3'- gUGGaCGGGCGGcGUCC-UCCCGUuca -5'
19128 5' -62.5 NC_004684.1 + 7914 0.69 0.230986
Target:  5'- cCGCCaGCCaGCCGguGGAGaacccaGGCAAGg -3'
miRNA:   3'- -GUGGaCGGgCGGCguCCUC------CCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 62789 0.7 0.21426
Target:  5'- uGCCUGCCCG--GCGGGGuugccGGGCAGGc -3'
miRNA:   3'- gUGGACGGGCggCGUCCU-----CCCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 2705 0.71 0.179245
Target:  5'- gGCCUGgCCGgUGCcGG-GGGCAAGUg -3'
miRNA:   3'- gUGGACgGGCgGCGuCCuCCCGUUCA- -5'
19128 5' -62.5 NC_004684.1 + 4492 0.72 0.150978
Target:  5'- gGCCUgGCCCGCCGUggcaacggcauggccGGGAuccuguuccgGGGCGAGa -3'
miRNA:   3'- gUGGA-CGGGCGGCG---------------UCCU----------CCCGUUCa -5'
19128 5' -62.5 NC_004684.1 + 4623 1.05 0.00042
Target:  5'- uCACCUGCCCGCCGCAGGAGGGCAAGUc -3'
miRNA:   3'- -GUGGACGGGCGGCGUCCUCCCGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.