miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19129 3' -60.3 NC_004684.1 + 63514 0.66 0.563796
Target:  5'- gUCUGA-CCAGGCCU--UGGCACUgCGc -3'
miRNA:   3'- -GGACUaGGUCUGGGccACCGUGGgGC- -5'
19129 3' -60.3 NC_004684.1 + 29117 0.66 0.562774
Target:  5'- gCUGcgCCAGACCagcacgugcgagcUGGUGGUGCCgaCGc -3'
miRNA:   3'- gGACuaGGUCUGG-------------GCCACCGUGGg-GC- -5'
19129 3' -60.3 NC_004684.1 + 44476 0.66 0.553602
Target:  5'- --cGGUCCAGgaACCCGGUcaccuugucgcuGGCACCgaCGc -3'
miRNA:   3'- ggaCUAGGUC--UGGGCCA------------CCGUGGg-GC- -5'
19129 3' -60.3 NC_004684.1 + 44555 0.66 0.553602
Target:  5'- uCUUGG-CCAG-CCCGGccuGCACCgCCGg -3'
miRNA:   3'- -GGACUaGGUCuGGGCCac-CGUGG-GGC- -5'
19129 3' -60.3 NC_004684.1 + 66740 0.66 0.553602
Target:  5'- uCUUGcgCaccACCCGGUacaGCACCCCGg -3'
miRNA:   3'- -GGACuaGgucUGGGCCAc--CGUGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 4239 0.66 0.552585
Target:  5'- aCCUGGUUCGGagucugagccgguGCCCGGcggaaUGGCcucuaCCCGg -3'
miRNA:   3'- -GGACUAGGUC-------------UGGGCC-----ACCGug---GGGC- -5'
19129 3' -60.3 NC_004684.1 + 4510 0.66 0.543464
Target:  5'- gCUGGcggCCaccguGGACCCGG-GGUucaacaucACCCCGg -3'
miRNA:   3'- gGACUa--GG-----UCUGGGCCaCCG--------UGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 1913 0.66 0.543464
Target:  5'- aCCUG--CCGGACCCGGccugccgggccUGGUACCg-- -3'
miRNA:   3'- -GGACuaGGUCUGGGCC-----------ACCGUGGggc -5'
19129 3' -60.3 NC_004684.1 + 2706 0.66 0.543464
Target:  5'- gCCUGG-CCGGugCCGGgGGCaaguGCgCCa -3'
miRNA:   3'- -GGACUaGGUCugGGCCaCCG----UGgGGc -5'
19129 3' -60.3 NC_004684.1 + 56752 0.66 0.533387
Target:  5'- aCCggcaCCAGACCaCGGUGGUgacgACgCCGa -3'
miRNA:   3'- -GGacuaGGUCUGG-GCCACCG----UGgGGC- -5'
19129 3' -60.3 NC_004684.1 + 57823 0.66 0.533387
Target:  5'- gCCUGGUCCcggcGGugCUGGccgccGGUACCCg- -3'
miRNA:   3'- -GGACUAGG----UCugGGCCa----CCGUGGGgc -5'
19129 3' -60.3 NC_004684.1 + 66865 0.66 0.532383
Target:  5'- gCCUGG-CCAGcacgucaGCgCCGGUGGCgACCuUCGg -3'
miRNA:   3'- -GGACUaGGUC-------UG-GGCCACCG-UGG-GGC- -5'
19129 3' -60.3 NC_004684.1 + 9786 0.66 0.523378
Target:  5'- aCCUcuacgCCgAGGCCCugcgccGGUGGCACCCg- -3'
miRNA:   3'- -GGAcua--GG-UCUGGG------CCACCGUGGGgc -5'
19129 3' -60.3 NC_004684.1 + 25584 0.66 0.523378
Target:  5'- cCCgGAgcgcUCCAGAUUgGGUGGgACgCCGg -3'
miRNA:   3'- -GGaCU----AGGUCUGGgCCACCgUGgGGC- -5'
19129 3' -60.3 NC_004684.1 + 4899 0.66 0.523378
Target:  5'- gCCUGGUcgCCAccGGCCuCGGcGGCACCaucaCCGg -3'
miRNA:   3'- -GGACUA--GGU--CUGG-GCCaCCGUGG----GGC- -5'
19129 3' -60.3 NC_004684.1 + 32763 0.66 0.513441
Target:  5'- aCCUGGUggcgugagCAuGACCgGGUGGCugCCgGa -3'
miRNA:   3'- -GGACUAg-------GU-CUGGgCCACCGugGGgC- -5'
19129 3' -60.3 NC_004684.1 + 25366 0.66 0.503583
Target:  5'- gCCUGAU--GGACCCGGUcaGCGCCUa- -3'
miRNA:   3'- -GGACUAggUCUGGGCCAc-CGUGGGgc -5'
19129 3' -60.3 NC_004684.1 + 66835 0.66 0.503583
Target:  5'- gCCUuGUCCuc-CUCGGUGGCgGCCUCGa -3'
miRNA:   3'- -GGAcUAGGucuGGGCCACCG-UGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 23679 0.67 0.493808
Target:  5'- gCCUGGUcggcCCGGACCagaGcGUGGC-CUCCa -3'
miRNA:   3'- -GGACUA----GGUCUGGg--C-CACCGuGGGGc -5'
19129 3' -60.3 NC_004684.1 + 5449 0.67 0.465026
Target:  5'- uCC-GGUgcaCCAGGCCCGGcgggugccgUGGCccgcACCCCGc -3'
miRNA:   3'- -GGaCUA---GGUCUGGGCC---------ACCG----UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.