miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19129 3' -60.3 NC_004684.1 + 5072 1.1 0.000429
Target:  5'- uCCUGAUCCAGACCCGGUGGCACCCCGa -3'
miRNA:   3'- -GGACUAGGUCUGGGCCACCGUGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 38673 0.74 0.178426
Target:  5'- aCCUGAUCCAGGUCCGGcgcGGC-UCCCa -3'
miRNA:   3'- -GGACUAGGUCUGGGCCa--CCGuGGGGc -5'
19129 3' -60.3 NC_004684.1 + 27647 0.74 0.187754
Target:  5'- aCCcGGUCuCAuGACCaCGGUGGaCACCCUGg -3'
miRNA:   3'- -GGaCUAG-GU-CUGG-GCCACC-GUGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 14238 0.73 0.192577
Target:  5'- gCCUucacgCCGGACCCGGUGGa--CCCGg -3'
miRNA:   3'- -GGAcua--GGUCUGGGCCACCgugGGGC- -5'
19129 3' -60.3 NC_004684.1 + 53633 0.72 0.239271
Target:  5'- gCCUGGagcgCCAGGCCguugagcaccgaggUGGUGGCACCgaCCGa -3'
miRNA:   3'- -GGACUa---GGUCUGG--------------GCCACCGUGG--GGC- -5'
19129 3' -60.3 NC_004684.1 + 22510 0.72 0.241039
Target:  5'- aCCUGGUUCcG-UCCGGUGcGCgACCCCGg -3'
miRNA:   3'- -GGACUAGGuCuGGGCCAC-CG-UGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 1459 0.72 0.251263
Target:  5'- aCCUGGUCgAGaccgggccggacguGCCCGGUgcGGCgGCCCUGg -3'
miRNA:   3'- -GGACUAGgUC--------------UGGGCCA--CCG-UGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 47816 0.72 0.255576
Target:  5'- aCUGGgcaggugcacgacgCCAGGCCCGGagaccUGGCACcgCCCGg -3'
miRNA:   3'- gGACUa-------------GGUCUGGGCC-----ACCGUG--GGGC- -5'
19129 3' -60.3 NC_004684.1 + 19516 0.71 0.278719
Target:  5'- aCCUGAUCCAGACgCucaccGGCACCgCCu -3'
miRNA:   3'- -GGACUAGGUCUGgGcca--CCGUGG-GGc -5'
19129 3' -60.3 NC_004684.1 + 31341 0.7 0.299255
Target:  5'- gCUGAUCCAGguGCCCGGUGucuGCACggCGg -3'
miRNA:   3'- gGACUAGGUC--UGGGCCAC---CGUGggGC- -5'
19129 3' -60.3 NC_004684.1 + 13176 0.7 0.306356
Target:  5'- aCCUGGUCCAggacagccacGACCUGGUGGCugaaaUCGa -3'
miRNA:   3'- -GGACUAGGU----------CUGGGCCACCGugg--GGC- -5'
19129 3' -60.3 NC_004684.1 + 42529 0.7 0.320202
Target:  5'- gCUUGAUgggggugCCGaacGGCCCGGUGGCGCUaCCGc -3'
miRNA:   3'- -GGACUA-------GGU---CUGGGCCACCGUGG-GGC- -5'
19129 3' -60.3 NC_004684.1 + 12700 0.7 0.320943
Target:  5'- gUCUGG-CCuu-CCCGGUGGCugguggcuCCCCGg -3'
miRNA:   3'- -GGACUaGGucuGGGCCACCGu-------GGGGC- -5'
19129 3' -60.3 NC_004684.1 + 47116 0.7 0.327675
Target:  5'- --gGGUCCGGcagagcgugcGCCuCGGUGGCguaggcgGCCCCGg -3'
miRNA:   3'- ggaCUAGGUC----------UGG-GCCACCG-------UGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 57513 0.7 0.328429
Target:  5'- gCCUGcgCCGGAUCCcgaggcGGUGGCccGCCuCCa -3'
miRNA:   3'- -GGACuaGGUCUGGG------CCACCG--UGG-GGc -5'
19129 3' -60.3 NC_004684.1 + 36589 0.7 0.336044
Target:  5'- -aUGA-CCGgcauGACCCuGGUGGC-CCCCGg -3'
miRNA:   3'- ggACUaGGU----CUGGG-CCACCGuGGGGC- -5'
19129 3' -60.3 NC_004684.1 + 36925 0.69 0.351656
Target:  5'- gCCcGGUCgAGGCCgGGUGGaCACgCCUGc -3'
miRNA:   3'- -GGaCUAGgUCUGGgCCACC-GUG-GGGC- -5'
19129 3' -60.3 NC_004684.1 + 27832 0.69 0.367776
Target:  5'- gCCUGAUCCG--UCCGGUG-CugUCCGg -3'
miRNA:   3'- -GGACUAGGUcuGGGCCACcGugGGGC- -5'
19129 3' -60.3 NC_004684.1 + 683 0.69 0.381872
Target:  5'- gCCUGAUCCucGGCCCcgaggucagccgccGGUGGaCGgCCUGg -3'
miRNA:   3'- -GGACUAGGu-CUGGG--------------CCACC-GUgGGGC- -5'
19129 3' -60.3 NC_004684.1 + 2223 0.69 0.384397
Target:  5'- -aUGGUCCAGACC--GUGGUGCCCa- -3'
miRNA:   3'- ggACUAGGUCUGGgcCACCGUGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.