miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19129 5' -56.2 NC_004684.1 + 7279 0.66 0.744612
Target:  5'- aGGCGAGaccaGUUCAUCGCCGcACUGc- -3'
miRNA:   3'- -CCGUUCca--CGAGUGGCGGCuUGACcu -5'
19129 5' -56.2 NC_004684.1 + 12859 0.66 0.743589
Target:  5'- aGGcCGAGGccGC-CACCGCCGAggccgccGCcggGGAg -3'
miRNA:   3'- -CC-GUUCCa-CGaGUGGCGGCU-------UGa--CCU- -5'
19129 5' -56.2 NC_004684.1 + 30512 0.66 0.743589
Target:  5'- uGGCGcugGGGUcggugaaGUUCACCGCCGAcgGCUc-- -3'
miRNA:   3'- -CCGU---UCCA-------CGAGUGGCGGCU--UGAccu -5'
19129 5' -56.2 NC_004684.1 + 48971 0.66 0.738457
Target:  5'- cGGCcgccGGUGCgcccgCcggGCCGCCGAAguaguaggucgugccCUGGAa -3'
miRNA:   3'- -CCGuu--CCACGa----G---UGGCGGCUU---------------GACCU- -5'
19129 5' -56.2 NC_004684.1 + 57874 0.66 0.734332
Target:  5'- cGGCAcgccagaccGGUGCUgGCUggugGCCGGGCUGa- -3'
miRNA:   3'- -CCGUu--------CCACGAgUGG----CGGCUUGACcu -5'
19129 5' -56.2 NC_004684.1 + 61032 0.66 0.734332
Target:  5'- uGGC-GGGUGCgUC-CCGCCGuACaGGu -3'
miRNA:   3'- -CCGuUCCACG-AGuGGCGGCuUGaCCu -5'
19129 5' -56.2 NC_004684.1 + 26715 0.66 0.734332
Target:  5'- -uCAAGGUGCUCGgCGUCGAAaucGAg -3'
miRNA:   3'- ccGUUCCACGAGUgGCGGCUUgacCU- -5'
19129 5' -56.2 NC_004684.1 + 60730 0.66 0.734332
Target:  5'- gGGaGAGGUGCccggcgaccgggUgGCCGCCGggUgGGGg -3'
miRNA:   3'- -CCgUUCCACG------------AgUGGCGGCuuGaCCU- -5'
19129 5' -56.2 NC_004684.1 + 55725 0.66 0.734332
Target:  5'- cGCGGcGGUcacGUUgGCCGCCGuGCUGGc -3'
miRNA:   3'- cCGUU-CCA---CGAgUGGCGGCuUGACCu -5'
19129 5' -56.2 NC_004684.1 + 58090 0.66 0.734332
Target:  5'- cGGCGGGGgguagcGC-CACCGUCG-GCgucgGGAa -3'
miRNA:   3'- -CCGUUCCa-----CGaGUGGCGGCuUGa---CCU- -5'
19129 5' -56.2 NC_004684.1 + 59508 0.66 0.734332
Target:  5'- gGGCAcgcugacGuGUGCUCACCGguuCCGAcUUGGGa -3'
miRNA:   3'- -CCGUu------C-CACGAGUGGC---GGCUuGACCU- -5'
19129 5' -56.2 NC_004684.1 + 57832 0.66 0.723954
Target:  5'- cGGC--GGUGCUgGCCGCCGGu----- -3'
miRNA:   3'- -CCGuuCCACGAgUGGCGGCUugaccu -5'
19129 5' -56.2 NC_004684.1 + 55789 0.66 0.719777
Target:  5'- aGCucGGUGCcgucguccaggcgCACCGgCGGGCUGGu -3'
miRNA:   3'- cCGuuCCACGa------------GUGGCgGCUUGACCu -5'
19129 5' -56.2 NC_004684.1 + 34156 0.66 0.702943
Target:  5'- cGGCAcGGUgcuGCUCACCGgcacgcCCGAGCUc-- -3'
miRNA:   3'- -CCGUuCCA---CGAGUGGC------GGCUUGAccu -5'
19129 5' -56.2 NC_004684.1 + 34472 0.66 0.699767
Target:  5'- aGGCAcccAGGUcCggCACCGCCGAggacacccccgaaaAUUGGGc -3'
miRNA:   3'- -CCGU---UCCAcGa-GUGGCGGCU--------------UGACCU- -5'
19129 5' -56.2 NC_004684.1 + 55886 0.66 0.692334
Target:  5'- gGGCAuGGaccUGCccgauggccugUUACCGCCGgAGCUGGu -3'
miRNA:   3'- -CCGUuCC---ACG-----------AGUGGCGGC-UUGACCu -5'
19129 5' -56.2 NC_004684.1 + 12051 0.66 0.692334
Target:  5'- aGCAGGaGgcgGCUCgccugGCCGCCGAgcgcgacgagguGCUGGc -3'
miRNA:   3'- cCGUUC-Ca--CGAG-----UGGCGGCU------------UGACCu -5'
19129 5' -56.2 NC_004684.1 + 20500 0.66 0.692334
Target:  5'- cGGCGGGGUGCUCGgcugacaUGUCGcGC-GGAu -3'
miRNA:   3'- -CCGUUCCACGAGUg------GCGGCuUGaCCU- -5'
19129 5' -56.2 NC_004684.1 + 25832 0.66 0.692334
Target:  5'- aGCAAGGUGUcgCACCcgGCC-AGgUGGAa -3'
miRNA:   3'- cCGUUCCACGa-GUGG--CGGcUUgACCU- -5'
19129 5' -56.2 NC_004684.1 + 11072 0.66 0.692334
Target:  5'- cGGCAAGGUGCUCGgU-UCGGGCUa-- -3'
miRNA:   3'- -CCGUUCCACGAGUgGcGGCUUGAccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.