miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19129 5' -56.2 NC_004684.1 + 11072 0.66 0.692334
Target:  5'- cGGCAAGGUGCUCGgU-UCGGGCUa-- -3'
miRNA:   3'- -CCGUUCCACGAGUgGcGGCUUGAccu -5'
19129 5' -56.2 NC_004684.1 + 51036 0.66 0.692334
Target:  5'- cGGCAGGaUGCggcCACCGCCGGugACgaugcgcccgUGGGu -3'
miRNA:   3'- -CCGUUCcACGa--GUGGCGGCU--UG----------ACCU- -5'
19129 5' -56.2 NC_004684.1 + 26503 0.67 0.681668
Target:  5'- uGGCGAGcacGUGCUgacCACCGCUGAcgugucgcgcCUGGGc -3'
miRNA:   3'- -CCGUUC---CACGA---GUGGCGGCUu---------GACCU- -5'
19129 5' -56.2 NC_004684.1 + 24303 0.67 0.681668
Target:  5'- aGGCGAGGUccguaUCAaagacccgUCGCCGGagcuGCUGGAa -3'
miRNA:   3'- -CCGUUCCAcg---AGU--------GGCGGCU----UGACCU- -5'
19129 5' -56.2 NC_004684.1 + 66776 0.67 0.670957
Target:  5'- cGGCGcGGUaCUCGCCGCCcuuguggcugcgGAACUucGGGg -3'
miRNA:   3'- -CCGUuCCAcGAGUGGCGG------------CUUGA--CCU- -5'
19129 5' -56.2 NC_004684.1 + 28579 0.67 0.670957
Target:  5'- gGGCAccgccAGGcGggCACCGCC--GCUGGAa -3'
miRNA:   3'- -CCGU-----UCCaCgaGUGGCGGcuUGACCU- -5'
19129 5' -56.2 NC_004684.1 + 19604 0.67 0.664513
Target:  5'- cGGcCGAGGUGCUgGCgGugacgcucggcgacaCCGuGCUGGAc -3'
miRNA:   3'- -CC-GUUCCACGAgUGgC---------------GGCuUGACCU- -5'
19129 5' -56.2 NC_004684.1 + 36220 0.67 0.66021
Target:  5'- cGCAGcGUgGC-CACCGCCGAgaccGCUGGc -3'
miRNA:   3'- cCGUUcCA-CGaGUGGCGGCU----UGACCu -5'
19129 5' -56.2 NC_004684.1 + 47269 0.67 0.66021
Target:  5'- cGCAcguucuuGGUGC-CGCCGCCcagcgguGGCUGGAc -3'
miRNA:   3'- cCGUu------CCACGaGUGGCGGc------UUGACCU- -5'
19129 5' -56.2 NC_004684.1 + 61219 0.67 0.66021
Target:  5'- uGCccGGUGCcUACCGCCGcacGCUGGc -3'
miRNA:   3'- cCGuuCCACGaGUGGCGGCu--UGACCu -5'
19129 5' -56.2 NC_004684.1 + 46616 0.67 0.649439
Target:  5'- uGGCuucGGG-GC-CACCGCCuccGGugUGGAc -3'
miRNA:   3'- -CCGu--UCCaCGaGUGGCGG---CUugACCU- -5'
19129 5' -56.2 NC_004684.1 + 65128 0.67 0.649439
Target:  5'- cGGCAA--UGCcCGCCGCCGcGCUGa- -3'
miRNA:   3'- -CCGUUccACGaGUGGCGGCuUGACcu -5'
19129 5' -56.2 NC_004684.1 + 60966 0.67 0.638652
Target:  5'- cGCgAAGGcGUUCacgccGCCGCCGAGCUGu- -3'
miRNA:   3'- cCG-UUCCaCGAG-----UGGCGGCUUGACcu -5'
19129 5' -56.2 NC_004684.1 + 8491 0.67 0.638652
Target:  5'- gGGCGGGGacgGCgagaCGgUGCCGuGCUGGGa -3'
miRNA:   3'- -CCGUUCCa--CGa---GUgGCGGCuUGACCU- -5'
19129 5' -56.2 NC_004684.1 + 18119 0.67 0.638652
Target:  5'- aGGCcGGuGUGgaCACCGCC-AACaUGGAc -3'
miRNA:   3'- -CCGuUC-CACgaGUGGCGGcUUG-ACCU- -5'
19129 5' -56.2 NC_004684.1 + 47963 0.67 0.62786
Target:  5'- cGCAcGGUGguUUCGCagagGCCGAACUGGc -3'
miRNA:   3'- cCGUuCCAC--GAGUGg---CGGCUUGACCu -5'
19129 5' -56.2 NC_004684.1 + 61729 0.67 0.62786
Target:  5'- cGGCGuuGUGCUucucCACCGCCGccuCgUGGAu -3'
miRNA:   3'- -CCGUucCACGA----GUGGCGGCuu-G-ACCU- -5'
19129 5' -56.2 NC_004684.1 + 21486 0.68 0.617071
Target:  5'- cGCGAGcgcaccaacaucGUGUUCGCCGCC-AGCgUGGAc -3'
miRNA:   3'- cCGUUC------------CACGAGUGGCGGcUUG-ACCU- -5'
19129 5' -56.2 NC_004684.1 + 63397 0.68 0.617071
Target:  5'- cGGCGuagcGGUaCUC-CCGaCCGGACUGGu -3'
miRNA:   3'- -CCGUu---CCAcGAGuGGC-GGCUUGACCu -5'
19129 5' -56.2 NC_004684.1 + 23111 0.68 0.607372
Target:  5'- cGGCGAcgccgugcacgaguGGUGUgcCGCCGUCGAcugcgccauggucacGCUGGAg -3'
miRNA:   3'- -CCGUU--------------CCACGa-GUGGCGGCU---------------UGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.