miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1913 3' -53.3 NC_001347.2 + 142227 0.66 0.994241
Target:  5'- cGCgucCGACgaugUGCUCuucuuCGUggauggcuGCGAGGCGCu -3'
miRNA:   3'- -UGa--GCUGa---GCGAGu----GCA--------UGCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 25869 0.66 0.994241
Target:  5'- cACgaagCGGCccUgGCUgUACGcUACGAGACGCc -3'
miRNA:   3'- -UGa---GCUG--AgCGA-GUGC-AUGCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 158138 0.66 0.994241
Target:  5'- cGCUCuggugucuGugUCGaCUCAaGUGCGAG-CGCc -3'
miRNA:   3'- -UGAG--------CugAGC-GAGUgCAUGCUCuGCG- -5'
1913 3' -53.3 NC_001347.2 + 22326 0.66 0.993385
Target:  5'- gGCUUGGCUCGCcuUCcccgAUGUGCaGGGACa- -3'
miRNA:   3'- -UGAGCUGAGCG--AG----UGCAUG-CUCUGcg -5'
1913 3' -53.3 NC_001347.2 + 9308 0.66 0.993385
Target:  5'- gGCgagCGACUCGgUCAag-AUGAG-CGCa -3'
miRNA:   3'- -UGa--GCUGAGCgAGUgcaUGCUCuGCG- -5'
1913 3' -53.3 NC_001347.2 + 215546 0.66 0.992431
Target:  5'- aGCU-GGCUaacuaGCUaCACGgugcgACGAGACGUu -3'
miRNA:   3'- -UGAgCUGAg----CGA-GUGCa----UGCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 30522 0.66 0.992431
Target:  5'- --aCGuaauACUCGCgUCACGU-CGGGACGa -3'
miRNA:   3'- ugaGC----UGAGCG-AGUGCAuGCUCUGCg -5'
1913 3' -53.3 NC_001347.2 + 194959 0.66 0.992431
Target:  5'- uUUCGGCUCGUggaACGUGgcCGAGGC-Cg -3'
miRNA:   3'- uGAGCUGAGCGag-UGCAU--GCUCUGcG- -5'
1913 3' -53.3 NC_001347.2 + 142495 0.66 0.990195
Target:  5'- aACUCcAUUUGCUUcgGCGUgcccgGCGAGACGg -3'
miRNA:   3'- -UGAGcUGAGCGAG--UGCA-----UGCUCUGCg -5'
1913 3' -53.3 NC_001347.2 + 165658 0.66 0.988899
Target:  5'- aACUCGcGCUCaGCcgCGCGU-CcAGACGCg -3'
miRNA:   3'- -UGAGC-UGAG-CGa-GUGCAuGcUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 163797 0.67 0.987472
Target:  5'- aGCUC-AgUUGUUCGCGUAUGAcGACGa -3'
miRNA:   3'- -UGAGcUgAGCGAGUGCAUGCU-CUGCg -5'
1913 3' -53.3 NC_001347.2 + 195897 0.67 0.985909
Target:  5'- cGC-CGGCgcuuucCGCcgUCugGUgcACGAGGCGCa -3'
miRNA:   3'- -UGaGCUGa-----GCG--AGugCA--UGCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 142331 0.67 0.985909
Target:  5'- cGCUgGAgaaCUUGCgaCGCGUGCuGGACGCc -3'
miRNA:   3'- -UGAgCU---GAGCGa-GUGCAUGcUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 75962 0.67 0.982338
Target:  5'- aGCUCGACggGCU-GCG-GCGAGuCGCc -3'
miRNA:   3'- -UGAGCUGagCGAgUGCaUGCUCuGCG- -5'
1913 3' -53.3 NC_001347.2 + 81596 0.68 0.973478
Target:  5'- cGC-CGGCcggUCGCUCGCGaaaagccguggcauUGAGACGCa -3'
miRNA:   3'- -UGaGCUG---AGCGAGUGCau------------GCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 198577 0.68 0.97048
Target:  5'- cGC-CGGCgUGCUCGCGUA-GAG-CGCg -3'
miRNA:   3'- -UGaGCUGaGCGAGUGCAUgCUCuGCG- -5'
1913 3' -53.3 NC_001347.2 + 195815 0.68 0.970196
Target:  5'- cGCUCGAgucggacCUCGCUgucugggcCGCGcuuCGAGGCGUg -3'
miRNA:   3'- -UGAGCU-------GAGCGA--------GUGCau-GCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 2361 0.68 0.967551
Target:  5'- uGCUgGGCgCGCUgGCGc-UGGGACGCg -3'
miRNA:   3'- -UGAgCUGaGCGAgUGCauGCUCUGCG- -5'
1913 3' -53.3 NC_001347.2 + 182941 0.69 0.964422
Target:  5'- aACUCGccgcGCUCGCggGCGUcCGAGAC-Cg -3'
miRNA:   3'- -UGAGC----UGAGCGagUGCAuGCUCUGcG- -5'
1913 3' -53.3 NC_001347.2 + 107625 0.69 0.961088
Target:  5'- --gCGACgagaacggCGC-CACGUucccACGGGACGCg -3'
miRNA:   3'- ugaGCUGa-------GCGaGUGCA----UGCUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.