miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1913 5' -59.5 NC_001347.2 + 48248 0.66 0.854553
Target:  5'- aGGCGCauacuCGGCCuGGGGCGcGGGcUCGu -3'
miRNA:   3'- aCCGCG-----GCCGGuCUCUGUaCCUcAGC- -5'
1913 5' -59.5 NC_001347.2 + 142430 0.66 0.854553
Target:  5'- gUGGCGUCGGCgCGGcguccGGCGUcGGGGguggCGg -3'
miRNA:   3'- -ACCGCGGCCG-GUCu----CUGUA-CCUCa---GC- -5'
1913 5' -59.5 NC_001347.2 + 86929 0.66 0.841667
Target:  5'- aGGCGCCGuagcucauuugcgccGCCAGAaugagcaGACA-GGcGUCGg -3'
miRNA:   3'- aCCGCGGC---------------CGGUCU-------CUGUaCCuCAGC- -5'
1913 5' -59.5 NC_001347.2 + 2041 0.66 0.839341
Target:  5'- -cGCGCCGugcgcgauaGCgGGAGcCGUGGGGUCc -3'
miRNA:   3'- acCGCGGC---------CGgUCUCuGUACCUCAGc -5'
1913 5' -59.5 NC_001347.2 + 198136 0.66 0.831476
Target:  5'- cGGUGgCaGCgGGGGugGUGGGGaUCGg -3'
miRNA:   3'- aCCGCgGcCGgUCUCugUACCUC-AGC- -5'
1913 5' -59.5 NC_001347.2 + 2366 0.66 0.831476
Target:  5'- gGcGCGCUGGCgCuGGGACGc-GAGUCGg -3'
miRNA:   3'- aC-CGCGGCCG-GuCUCUGUacCUCAGC- -5'
1913 5' -59.5 NC_001347.2 + 85819 0.67 0.823447
Target:  5'- -aGCGCCcagcGCCcc-GACGUGGGGUCGa -3'
miRNA:   3'- acCGCGGc---CGGucuCUGUACCUCAGC- -5'
1913 5' -59.5 NC_001347.2 + 77515 0.67 0.823447
Target:  5'- cGGCGCgUGGCC-GAGGaGUGGaAGUUGc -3'
miRNA:   3'- aCCGCG-GCCGGuCUCUgUACC-UCAGC- -5'
1913 5' -59.5 NC_001347.2 + 156837 0.67 0.823447
Target:  5'- cGcGCGUCGGCCucuggaGGAGcACGU-GAGUCGu -3'
miRNA:   3'- aC-CGCGGCCGG------UCUC-UGUAcCUCAGC- -5'
1913 5' -59.5 NC_001347.2 + 164915 0.68 0.754143
Target:  5'- aGGCGgUGGCCAGuGuuuUGGAcGUCGu -3'
miRNA:   3'- aCCGCgGCCGGUCuCuguACCU-CAGC- -5'
1913 5' -59.5 NC_001347.2 + 36789 0.68 0.754143
Target:  5'- cGuaGCCGGUCGcGGACcgcGGAGUCGg -3'
miRNA:   3'- aCcgCGGCCGGUcUCUGua-CCUCAGC- -5'
1913 5' -59.5 NC_001347.2 + 1960 0.68 0.754143
Target:  5'- cGGgGCCGGCgaCGGGGACGgcggcGGGGaCGa -3'
miRNA:   3'- aCCgCGGCCG--GUCUCUGUa----CCUCaGC- -5'
1913 5' -59.5 NC_001347.2 + 165855 0.68 0.754143
Target:  5'- aUGGCgagGCCGGCggCAGGGACAccGAuGUCGa -3'
miRNA:   3'- -ACCG---CGGCCG--GUCUCUGUacCU-CAGC- -5'
1913 5' -59.5 NC_001347.2 + 174993 0.68 0.744959
Target:  5'- gUGGUGCgGGCCGugccgGUGGAGUCGc -3'
miRNA:   3'- -ACCGCGgCCGGUcucugUACCUCAGC- -5'
1913 5' -59.5 NC_001347.2 + 43096 0.68 0.735686
Target:  5'- cGGCGCCGGCaugccGAgGUGGGGcCa -3'
miRNA:   3'- aCCGCGGCCGgucu-CUgUACCUCaGc -5'
1913 5' -59.5 NC_001347.2 + 210877 0.68 0.726332
Target:  5'- aGGCcuguccGCCGcGCCAGcuGGCAcGGAGUUGg -3'
miRNA:   3'- aCCG------CGGC-CGGUCu-CUGUaCCUCAGC- -5'
1913 5' -59.5 NC_001347.2 + 40611 0.7 0.663113
Target:  5'- cUGGcCGCCGGCgaugccgggguguugCGGAGACggGGGGUg- -3'
miRNA:   3'- -ACC-GCGGCCG---------------GUCUCUGuaCCUCAgc -5'
1913 5' -59.5 NC_001347.2 + 136103 0.7 0.619306
Target:  5'- cGGCGCCgggccucGGCCGGGGAgGguggGGGGUa- -3'
miRNA:   3'- aCCGCGG-------CCGGUCUCUgUa---CCUCAgc -5'
1913 5' -59.5 NC_001347.2 + 140582 0.72 0.54316
Target:  5'- cGGUGCUGGCgGGGGugGUGGA--CGa -3'
miRNA:   3'- aCCGCGGCCGgUCUCugUACCUcaGC- -5'
1913 5' -59.5 NC_001347.2 + 142572 0.72 0.54316
Target:  5'- cGGCGUCGGCgGGAG-CAgcgGGGG-CGg -3'
miRNA:   3'- aCCGCGGCCGgUCUCuGUa--CCUCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.