miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19130 3' -56 NC_004684.1 + 38164 0.66 0.749202
Target:  5'- gGCCGCGccacagcauguccugGCCGUU-GCCGUcCCACAc -3'
miRNA:   3'- -CGGCGUcua------------CGGCAAgCGGUA-GGUGU- -5'
19130 3' -56 NC_004684.1 + 23935 0.66 0.746133
Target:  5'- cGCCGCAccUGCUGc-CGCCccgCCGCAc -3'
miRNA:   3'- -CGGCGUcuACGGCaaGCGGua-GGUGU- -5'
19130 3' -56 NC_004684.1 + 13282 0.66 0.746133
Target:  5'- gGCCGCcGGUgGCUGgugcgCGCCGUCggaGCAg -3'
miRNA:   3'- -CGGCGuCUA-CGGCaa---GCGGUAGg--UGU- -5'
19130 3' -56 NC_004684.1 + 43254 0.66 0.746133
Target:  5'- gGCCGgAGAgcacgGCCaugUCGCCGcgcaCCACGu -3'
miRNA:   3'- -CGGCgUCUa----CGGca-AGCGGUa---GGUGU- -5'
19130 3' -56 NC_004684.1 + 26351 0.66 0.746133
Target:  5'- cGUCGguGuaGUGCCGUgCGUUGUCgGCAg -3'
miRNA:   3'- -CGGCguC--UACGGCAaGCGGUAGgUGU- -5'
19130 3' -56 NC_004684.1 + 20198 0.66 0.746133
Target:  5'- cGCCGCA----CCGUUCGCCG--CGCAg -3'
miRNA:   3'- -CGGCGUcuacGGCAAGCGGUagGUGU- -5'
19130 3' -56 NC_004684.1 + 2302 0.66 0.735832
Target:  5'- -aCGCGG-UGCUGacCGCCGUgCACGu -3'
miRNA:   3'- cgGCGUCuACGGCaaGCGGUAgGUGU- -5'
19130 3' -56 NC_004684.1 + 36717 0.66 0.723339
Target:  5'- cGCCGgGGGUuaccgcaucgacCUGUUCGCCGUCC-CGg -3'
miRNA:   3'- -CGGCgUCUAc-----------GGCAAGCGGUAGGuGU- -5'
19130 3' -56 NC_004684.1 + 31898 0.66 0.714938
Target:  5'- cGCCG-GGAcGuuGUUCGCgGUCgGCAu -3'
miRNA:   3'- -CGGCgUCUaCggCAAGCGgUAGgUGU- -5'
19130 3' -56 NC_004684.1 + 51627 0.66 0.71283
Target:  5'- cGCCGCgauAGGUGCCGcugcgcagcugcUgGCCGUgCACGa -3'
miRNA:   3'- -CGGCG---UCUACGGCa-----------AgCGGUAgGUGU- -5'
19130 3' -56 NC_004684.1 + 66257 0.66 0.704367
Target:  5'- cGCC-CGGcAUGCCGUg-GCCGUCgACc -3'
miRNA:   3'- -CGGcGUC-UACGGCAagCGGUAGgUGu -5'
19130 3' -56 NC_004684.1 + 65083 0.66 0.702245
Target:  5'- uGCgCGguGAucaUGCCGUcgagcaggguggCGUCGUCCGCGu -3'
miRNA:   3'- -CG-GCguCU---ACGGCAa-----------GCGGUAGGUGU- -5'
19130 3' -56 NC_004684.1 + 37066 0.66 0.693728
Target:  5'- cGCaGCAGAucgccUGCCuGUUCGCgGUgCGCGa -3'
miRNA:   3'- -CGgCGUCU-----ACGG-CAAGCGgUAgGUGU- -5'
19130 3' -56 NC_004684.1 + 40994 0.67 0.683031
Target:  5'- cGCCGguGgcGgCGUUgGCCAgaucgCCGCc -3'
miRNA:   3'- -CGGCguCuaCgGCAAgCGGUa----GGUGu -5'
19130 3' -56 NC_004684.1 + 54602 0.67 0.683031
Target:  5'- cGgCGgGGGUGCCGUuguccUCGUUggCCGCAg -3'
miRNA:   3'- -CgGCgUCUACGGCA-----AGCGGuaGGUGU- -5'
19130 3' -56 NC_004684.1 + 49130 0.67 0.683031
Target:  5'- gGCCGgGcGUGCCGUU-GCCGUCgAUg -3'
miRNA:   3'- -CGGCgUcUACGGCAAgCGGUAGgUGu -5'
19130 3' -56 NC_004684.1 + 15153 0.67 0.683031
Target:  5'- aGCgCGCAGcugGCCGc-CGCCG-CCACGc -3'
miRNA:   3'- -CG-GCGUCua-CGGCaaGCGGUaGGUGU- -5'
19130 3' -56 NC_004684.1 + 11401 0.67 0.672287
Target:  5'- uGCCGCGcgcGAUG-UGUUCGCCGUagaCGCc -3'
miRNA:   3'- -CGGCGU---CUACgGCAAGCGGUAg--GUGu -5'
19130 3' -56 NC_004684.1 + 53910 0.67 0.672287
Target:  5'- gGCgGUGGGguUGCCGUU-GCCGUCCuCGg -3'
miRNA:   3'- -CGgCGUCU--ACGGCAAgCGGUAGGuGU- -5'
19130 3' -56 NC_004684.1 + 66967 0.67 0.672287
Target:  5'- aGCCGUcgaccucgGGGUGCCaGUcgcccagcUUGCCcgCCACGg -3'
miRNA:   3'- -CGGCG--------UCUACGG-CA--------AGCGGuaGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.