miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19130 3' -56 NC_004684.1 + 5723 1.11 0.000775
Target:  5'- cGCCGCAGAUGCCGUUCGCCAUCCACAa -3'
miRNA:   3'- -CGGCGUCUACGGCAAGCGGUAGGUGU- -5'
19130 3' -56 NC_004684.1 + 41567 0.79 0.136102
Target:  5'- gGCCGCcGAUGCCGUUCugGCCG-CCACc -3'
miRNA:   3'- -CGGCGuCUACGGCAAG--CGGUaGGUGu -5'
19130 3' -56 NC_004684.1 + 12905 0.76 0.21442
Target:  5'- cGCCGCcagcGGUGCCGgugCGCCGUCgGCc -3'
miRNA:   3'- -CGGCGu---CUACGGCaa-GCGGUAGgUGu -5'
19130 3' -56 NC_004684.1 + 24506 0.75 0.237762
Target:  5'- uGCCGCAGGgccGCgCGUUCggcgguGCCAUCUACGg -3'
miRNA:   3'- -CGGCGUCUa--CG-GCAAG------CGGUAGGUGU- -5'
19130 3' -56 NC_004684.1 + 49092 0.74 0.283683
Target:  5'- cGCCaaccgGCAGGUGCCacaggUCGCCGUCgGCGu -3'
miRNA:   3'- -CGG-----CGUCUACGGca---AGCGGUAGgUGU- -5'
19130 3' -56 NC_004684.1 + 12399 0.74 0.305416
Target:  5'- uGCCGCAGGaGCCGUcCGCUgugGUCgGCGg -3'
miRNA:   3'- -CGGCGUCUaCGGCAaGCGG---UAGgUGU- -5'
19130 3' -56 NC_004684.1 + 46402 0.72 0.395785
Target:  5'- cGCCGCAGGaucggGCCGaccugCGCCG-CCGCu -3'
miRNA:   3'- -CGGCGUCUa----CGGCaa---GCGGUaGGUGu -5'
19130 3' -56 NC_004684.1 + 16508 0.71 0.413969
Target:  5'- cGCUcCAGGUGCCGUaugCGCCgcaGUCCugGg -3'
miRNA:   3'- -CGGcGUCUACGGCAa--GCGG---UAGGugU- -5'
19130 3' -56 NC_004684.1 + 15893 0.71 0.432659
Target:  5'- gGCgGCGG-UGaCCGggcggUGCCAUCCGCAg -3'
miRNA:   3'- -CGgCGUCuAC-GGCaa---GCGGUAGGUGU- -5'
19130 3' -56 NC_004684.1 + 45851 0.7 0.472452
Target:  5'- uGCCGCGcucguuGAUGgCGUcggcgaucaugugcgCGCCGUCCACGc -3'
miRNA:   3'- -CGGCGU------CUACgGCAa--------------GCGGUAGGUGU- -5'
19130 3' -56 NC_004684.1 + 34184 0.7 0.491509
Target:  5'- gGCCGCcGG-GCUGUccgUCGCCAUggCCACGg -3'
miRNA:   3'- -CGGCGuCUaCGGCA---AGCGGUA--GGUGU- -5'
19130 3' -56 NC_004684.1 + 45168 0.7 0.501682
Target:  5'- -gCGCGGGUGCCG-UCGCgCAgggaggCCACc -3'
miRNA:   3'- cgGCGUCUACGGCaAGCG-GUa-----GGUGu -5'
19130 3' -56 NC_004684.1 + 23893 0.7 0.501682
Target:  5'- uGCCGCugcaccuGcUGCCGcugCGCCcgCCGCAc -3'
miRNA:   3'- -CGGCGu------CuACGGCaa-GCGGuaGGUGU- -5'
19130 3' -56 NC_004684.1 + 41624 0.7 0.511945
Target:  5'- cGCCGguGGaGCCGgaCGCCAggCCGgGg -3'
miRNA:   3'- -CGGCguCUaCGGCaaGCGGUa-GGUgU- -5'
19130 3' -56 NC_004684.1 + 56600 0.69 0.522295
Target:  5'- uGCCGCuacGGUGCCGa-CGCCGU-CGCGg -3'
miRNA:   3'- -CGGCGu--CUACGGCaaGCGGUAgGUGU- -5'
19130 3' -56 NC_004684.1 + 5461 0.69 0.522295
Target:  5'- gGCCcgGCGGGUGCCGUggccCGCaccCCGCGa -3'
miRNA:   3'- -CGG--CGUCUACGGCAa---GCGguaGGUGU- -5'
19130 3' -56 NC_004684.1 + 57502 0.69 0.532724
Target:  5'- cGCaCGCAGGUGCCug-CGCCGgaUCC-CGa -3'
miRNA:   3'- -CG-GCGUCUACGGcaaGCGGU--AGGuGU- -5'
19130 3' -56 NC_004684.1 + 55412 0.69 0.532724
Target:  5'- uGCCGUcGGUGCCGccggUCGCgGUgugcgCCGCAg -3'
miRNA:   3'- -CGGCGuCUACGGCa---AGCGgUA-----GGUGU- -5'
19130 3' -56 NC_004684.1 + 1094 0.69 0.536917
Target:  5'- cGCCGC---UGCCGUcgggcacccgcaacgUgGCCGUCCGCu -3'
miRNA:   3'- -CGGCGucuACGGCA---------------AgCGGUAGGUGu -5'
19130 3' -56 NC_004684.1 + 49025 0.69 0.543227
Target:  5'- uGCCGguGAUGUCGagCGgCA-CCGCGc -3'
miRNA:   3'- -CGGCguCUACGGCaaGCgGUaGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.