miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19130 5' -62.5 NC_004684.1 + 20495 0.66 0.41066
Target:  5'- gGAUGCGGcGGGGUGCucggcugacaugucGCGCGgaUACa -3'
miRNA:   3'- -CUGCGCCaCCCCGCGu-------------CGCGCg-AUGa -5'
19130 5' -62.5 NC_004684.1 + 23699 0.66 0.407133
Target:  5'- aGCGUGGccuccaaccuGGGCgGCGGCGCGCUcaACa -3'
miRNA:   3'- cUGCGCCac--------CCCG-CGUCGCGCGA--UGa -5'
19130 5' -62.5 NC_004684.1 + 57233 0.66 0.407133
Target:  5'- aGCGCGGUGGccaGCGGCG-GCUgGCUg -3'
miRNA:   3'- cUGCGCCACCccgCGUCGCgCGA-UGA- -5'
19130 5' -62.5 NC_004684.1 + 26998 0.66 0.407133
Target:  5'- aGCGCGGc-GGGCGCGGCGaucaacaGCcagGCa -3'
miRNA:   3'- cUGCGCCacCCCGCGUCGCg------CGa--UGa -5'
19130 5' -62.5 NC_004684.1 + 54289 0.66 0.398399
Target:  5'- uGGC-CGGUGGGGCG--GCGUGCa--- -3'
miRNA:   3'- -CUGcGCCACCCCGCguCGCGCGauga -5'
19130 5' -62.5 NC_004684.1 + 9016 0.66 0.397532
Target:  5'- cGCGCGGUgccgugcGGGGCGgcaacCGGCGCGgCaACg -3'
miRNA:   3'- cUGCGCCA-------CCCCGC-----GUCGCGC-GaUGa -5'
19130 5' -62.5 NC_004684.1 + 48964 0.66 0.381295
Target:  5'- gGGCGgGGUggccGGGGCG-GGCGCGUcggugcccUGCUg -3'
miRNA:   3'- -CUGCgCCA----CCCCGCgUCGCGCG--------AUGA- -5'
19130 5' -62.5 NC_004684.1 + 41429 0.66 0.381295
Target:  5'- cGugGCGGUGGugcGGCGguGC-CGCc--- -3'
miRNA:   3'- -CugCGCCACC---CCGCguCGcGCGauga -5'
19130 5' -62.5 NC_004684.1 + 49504 0.66 0.372929
Target:  5'- cGGCGCGucgGGGGUGUAGCGgcccaGCgUGCa -3'
miRNA:   3'- -CUGCGCca-CCCCGCGUCGCg----CG-AUGa -5'
19130 5' -62.5 NC_004684.1 + 45621 0.67 0.356574
Target:  5'- cGCGuCGGUcuugccggGGaacaGGCGCAGCGCGCgGCc -3'
miRNA:   3'- cUGC-GCCA--------CC----CCGCGUCGCGCGaUGa -5'
19130 5' -62.5 NC_004684.1 + 36106 0.67 0.348588
Target:  5'- cGCGCGGUGGGuGCGCcugcuGGCcuuCGCcACa -3'
miRNA:   3'- cUGCGCCACCC-CGCG-----UCGc--GCGaUGa -5'
19130 5' -62.5 NC_004684.1 + 23769 0.67 0.348588
Target:  5'- --gGCcGUGGGGCGCGGCguuggGCGCg--- -3'
miRNA:   3'- cugCGcCACCCCGCGUCG-----CGCGauga -5'
19130 5' -62.5 NC_004684.1 + 40733 0.67 0.348588
Target:  5'- aGCGCGGcgGGGGCGguG-GCGgUGgUg -3'
miRNA:   3'- cUGCGCCa-CCCCGCguCgCGCgAUgA- -5'
19130 5' -62.5 NC_004684.1 + 55653 0.67 0.348588
Target:  5'- uGCGUGGagGaGGGCcugGCGGCGCaccaGCUGCUg -3'
miRNA:   3'- cUGCGCCa-C-CCCG---CGUCGCG----CGAUGA- -5'
19130 5' -62.5 NC_004684.1 + 61665 0.67 0.338398
Target:  5'- -uUGUGGaUGGcgaacggcaucugcGGCGCgagGGCGCGCUGCUc -3'
miRNA:   3'- cuGCGCC-ACC--------------CCGCG---UCGCGCGAUGA- -5'
19130 5' -62.5 NC_004684.1 + 7547 0.67 0.336077
Target:  5'- cGACGCGGUgcuggaccggccccgGGuGGCGCuggugcggcuGGUGCGCgGCa -3'
miRNA:   3'- -CUGCGCCA---------------CC-CCGCG----------UCGCGCGaUGa -5'
19130 5' -62.5 NC_004684.1 + 33885 0.67 0.333001
Target:  5'- --gGCGGUGcGGGCGguGCcgguggGCGCggACa -3'
miRNA:   3'- cugCGCCAC-CCCGCguCG------CGCGa-UGa -5'
19130 5' -62.5 NC_004684.1 + 5696 0.67 0.325402
Target:  5'- uGACGcCGGUGGa--GCAGCGCGCccucGCg -3'
miRNA:   3'- -CUGC-GCCACCccgCGUCGCGCGa---UGa -5'
19130 5' -62.5 NC_004684.1 + 25562 0.68 0.310592
Target:  5'- cGGCGCGGUGGaa---GGUGCGCUACc -3'
miRNA:   3'- -CUGCGCCACCccgcgUCGCGCGAUGa -5'
19130 5' -62.5 NC_004684.1 + 37551 0.68 0.310592
Target:  5'- cGGCGCGuUGGGGUGCAGCuGgGUa--- -3'
miRNA:   3'- -CUGCGCcACCCCGCGUCG-CgCGauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.