miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19130 5' -62.5 NC_004684.1 + 4311 0.69 0.256506
Target:  5'- gGACGCGGUGcaccGGGCGCacuggAGUGC-CUAUg -3'
miRNA:   3'- -CUGCGCCAC----CCCGCG-----UCGCGcGAUGa -5'
19130 5' -62.5 NC_004684.1 + 5528 0.71 0.185323
Target:  5'- uGGCGCagcuGGUGGaugaGGCGCAGaaCGUGCUGCg -3'
miRNA:   3'- -CUGCG----CCACC----CCGCGUC--GCGCGAUGa -5'
19130 5' -62.5 NC_004684.1 + 5696 0.67 0.325402
Target:  5'- uGACGcCGGUGGa--GCAGCGCGCccucGCg -3'
miRNA:   3'- -CUGC-GCCACCccgCGUCGCGCGa---UGa -5'
19130 5' -62.5 NC_004684.1 + 5766 1.07 0.000346
Target:  5'- uGACGCGGUGGGGCGCAGCGCGCUACUg -3'
miRNA:   3'- -CUGCGCCACCCCGCGUCGCGCGAUGA- -5'
19130 5' -62.5 NC_004684.1 + 7547 0.67 0.336077
Target:  5'- cGACGCGGUgcuggaccggccccgGGuGGCGCuggugcggcuGGUGCGCgGCa -3'
miRNA:   3'- -CUGCGCCA---------------CC-CCGCG----------UCGCGCGaUGa -5'
19130 5' -62.5 NC_004684.1 + 8481 0.69 0.240668
Target:  5'- aGGCGgGGUGGGGCGgGGacggcgagacggugcCGUGCUGg- -3'
miRNA:   3'- -CUGCgCCACCCCGCgUC---------------GCGCGAUga -5'
19130 5' -62.5 NC_004684.1 + 8902 0.69 0.244249
Target:  5'- cGGCGCGGcaagaaggGcGGGCGCGGCaaguucGCGCUGg- -3'
miRNA:   3'- -CUGCGCCa-------C-CCCGCGUCG------CGCGAUga -5'
19130 5' -62.5 NC_004684.1 + 9016 0.66 0.397532
Target:  5'- cGCGCGGUgccgugcGGGGCGgcaacCGGCGCGgCaACg -3'
miRNA:   3'- cUGCGCCA-------CCCCGC-----GUCGCGC-GaUGa -5'
19130 5' -62.5 NC_004684.1 + 11382 0.68 0.302668
Target:  5'- aGCGUGGUGGuGCGCGacuugccGCGCGCg--- -3'
miRNA:   3'- cUGCGCCACCcCGCGU-------CGCGCGauga -5'
19130 5' -62.5 NC_004684.1 + 11806 0.69 0.256506
Target:  5'- -cCGUGGagaaGGGCGCgAGCGCGCcGCUg -3'
miRNA:   3'- cuGCGCCac--CCCGCG-UCGCGCGaUGA- -5'
19130 5' -62.5 NC_004684.1 + 14805 0.69 0.236546
Target:  5'- cGGCGCGcuguccaccggacuGUGGGGCGCGcCGUGgUGCg -3'
miRNA:   3'- -CUGCGC--------------CACCCCGCGUcGCGCgAUGa -5'
19130 5' -62.5 NC_004684.1 + 15583 0.71 0.180638
Target:  5'- -cCGCGaGaagGGGGCGCgcucGGUGCGCUACc -3'
miRNA:   3'- cuGCGC-Ca--CCCCGCG----UCGCGCGAUGa -5'
19130 5' -62.5 NC_004684.1 + 20495 0.66 0.41066
Target:  5'- gGAUGCGGcGGGGUGCucggcugacaugucGCGCGgaUACa -3'
miRNA:   3'- -CUGCGCCaCCCCGCGu-------------CGCGCg-AUGa -5'
19130 5' -62.5 NC_004684.1 + 21316 0.68 0.273847
Target:  5'- cGAgGCGGUGGuccGGCGCGaccgccgcauccguGUGCGCUGa- -3'
miRNA:   3'- -CUgCGCCACC---CCGCGU--------------CGCGCGAUga -5'
19130 5' -62.5 NC_004684.1 + 22353 0.7 0.221197
Target:  5'- gGugGCGGcGGcGGCgGCGGuCGCGCUGg- -3'
miRNA:   3'- -CugCGCCaCC-CCG-CGUC-GCGCGAUga -5'
19130 5' -62.5 NC_004684.1 + 23699 0.66 0.407133
Target:  5'- aGCGUGGccuccaaccuGGGCgGCGGCGCGCUcaACa -3'
miRNA:   3'- cUGCGCCac--------CCCG-CGUCGCGCGA--UGa -5'
19130 5' -62.5 NC_004684.1 + 23769 0.67 0.348588
Target:  5'- --gGCcGUGGGGCGCGGCguuggGCGCg--- -3'
miRNA:   3'- cugCGcCACCCCGCGUCG-----CGCGauga -5'
19130 5' -62.5 NC_004684.1 + 25562 0.68 0.310592
Target:  5'- cGGCGCGGUGGaa---GGUGCGCUACc -3'
miRNA:   3'- -CUGCGCCACCccgcgUCGCGCGAUGa -5'
19130 5' -62.5 NC_004684.1 + 26998 0.66 0.407133
Target:  5'- aGCGCGGc-GGGCGCGGCGaucaacaGCcagGCa -3'
miRNA:   3'- cUGCGCCacCCCGCGUCGCg------CGa--UGa -5'
19130 5' -62.5 NC_004684.1 + 28076 0.75 0.095918
Target:  5'- gGGCGCGGcaacUGGGGCGCucguuaGGCGaGCUGCa -3'
miRNA:   3'- -CUGCGCC----ACCCCGCG------UCGCgCGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.