miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19131 3' -57.3 NC_004684.1 + 49529 0.65 0.661246
Target:  5'- aGCGUGCAcccggcgguguGCGCGGUggccgacuucggGCuGGCGUGgCCu -3'
miRNA:   3'- -UGCACGU-----------CGCGCCAa-----------CG-CUGUAC-GGu -5'
19131 3' -57.3 NC_004684.1 + 2255 0.66 0.652608
Target:  5'- cACGcUGauCAGCGCGGcgGCGgGCAUuGCCGc -3'
miRNA:   3'- -UGC-AC--GUCGCGCCaaCGC-UGUA-CGGU- -5'
19131 3' -57.3 NC_004684.1 + 51573 0.66 0.652608
Target:  5'- uGCGcGCuGCGCGGcgGCGACcgGgugguCCAa -3'
miRNA:   3'- -UGCaCGuCGCGCCaaCGCUGuaC-----GGU- -5'
19131 3' -57.3 NC_004684.1 + 11074 0.66 0.652608
Target:  5'- uCGcGCAGCGCGGUcuccacguccCGGCGcGCCAg -3'
miRNA:   3'- uGCaCGUCGCGCCAac--------GCUGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 63542 0.66 0.652608
Target:  5'- gGCGUGCcuucGGUGUGGUcgucgGuCGGCAcGCCGa -3'
miRNA:   3'- -UGCACG----UCGCGCCAa----C-GCUGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 54525 0.66 0.652608
Target:  5'- gGCG-GCGGCcucgGCGGUgGCGGCcucgGCCu -3'
miRNA:   3'- -UGCaCGUCG----CGCCAaCGCUGua--CGGu -5'
19131 3' -57.3 NC_004684.1 + 51535 0.66 0.641795
Target:  5'- cACGUGCucgaugaccucGGCGUGcGUcggUGUGGCgAUGCCGc -3'
miRNA:   3'- -UGCACG-----------UCGCGC-CA---ACGCUG-UACGGU- -5'
19131 3' -57.3 NC_004684.1 + 66257 0.66 0.630972
Target:  5'- aGCGUGCucAGCGCGGcgucgucccaGCGGacgGCCAc -3'
miRNA:   3'- -UGCACG--UCGCGCCaa--------CGCUguaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 50029 0.66 0.630972
Target:  5'- gGCG-GCAGCGUGGccggUGCcuGGCuccagGCCAg -3'
miRNA:   3'- -UGCaCGUCGCGCCa---ACG--CUGua---CGGU- -5'
19131 3' -57.3 NC_004684.1 + 41410 0.66 0.62989
Target:  5'- cCGUcGCGGUggcgucccccgugGCGGUggUGCGGCGgUGCCGc -3'
miRNA:   3'- uGCA-CGUCG-------------CGCCA--ACGCUGU-ACGGU- -5'
19131 3' -57.3 NC_004684.1 + 52230 0.66 0.620151
Target:  5'- ---aGguGCGUGGcgGCGGCG-GCCAg -3'
miRNA:   3'- ugcaCguCGCGCCaaCGCUGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 45319 0.66 0.620151
Target:  5'- cGCGUGCGGUGUcccGGUaGCcaGACuGUGCCu -3'
miRNA:   3'- -UGCACGUCGCG---CCAaCG--CUG-UACGGu -5'
19131 3' -57.3 NC_004684.1 + 55852 0.66 0.620151
Target:  5'- uGCGUGCAGUGCGacguCGAC--GCCAa -3'
miRNA:   3'- -UGCACGUCGCGCcaacGCUGuaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 60349 0.66 0.619069
Target:  5'- cGCGUucggccaGCGGUGCcaggucggucaGGUUG-GGCAUGCCGg -3'
miRNA:   3'- -UGCA-------CGUCGCG-----------CCAACgCUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 43255 0.66 0.60934
Target:  5'- aGCGgugcGCAGCG-GGUacggcugcUGCGucgGCGUGCCGg -3'
miRNA:   3'- -UGCa---CGUCGCgCCA--------ACGC---UGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 45211 0.67 0.598547
Target:  5'- aGCG-GCAGCGCGuccaUGCGGCgcuugGUGCUg -3'
miRNA:   3'- -UGCaCGUCGCGCca--ACGCUG-----UACGGu -5'
19131 3' -57.3 NC_004684.1 + 53896 0.67 0.598547
Target:  5'- uCGUGgGG-GUGGUUGUGACGgggGUCAg -3'
miRNA:   3'- uGCACgUCgCGCCAACGCUGUa--CGGU- -5'
19131 3' -57.3 NC_004684.1 + 39210 0.67 0.598547
Target:  5'- cACGUGCGccucGCGCaGGUUGC-ACGccaGCCAu -3'
miRNA:   3'- -UGCACGU----CGCG-CCAACGcUGUa--CGGU- -5'
19131 3' -57.3 NC_004684.1 + 52315 0.67 0.587783
Target:  5'- cGCGcGCAgcuGCGCGG-UGCG-CAgGCCAg -3'
miRNA:   3'- -UGCaCGU---CGCGCCaACGCuGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 19445 0.67 0.587783
Target:  5'- cCGUGCgcccaugcccgGGCgGCGGUggcccgcGCGACAUGCg- -3'
miRNA:   3'- uGCACG-----------UCG-CGCCAa------CGCUGUACGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.