miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19131 3' -57.3 NC_004684.1 + 2255 0.66 0.652608
Target:  5'- cACGcUGauCAGCGCGGcgGCGgGCAUuGCCGc -3'
miRNA:   3'- -UGC-AC--GUCGCGCCaaCGC-UGUA-CGGU- -5'
19131 3' -57.3 NC_004684.1 + 5328 0.75 0.189111
Target:  5'- cCGUGCAGCagugggugGCGGUggGCuGACAUGCCc -3'
miRNA:   3'- uGCACGUCG--------CGCCAa-CG-CUGUACGGu -5'
19131 3' -57.3 NC_004684.1 + 5785 0.68 0.524219
Target:  5'- uGCGUGguGUGCGGgcGgGAC--GCCu -3'
miRNA:   3'- -UGCACguCGCGCCaaCgCUGuaCGGu -5'
19131 3' -57.3 NC_004684.1 + 6651 0.93 0.010372
Target:  5'- gACGUGCAGCGCGGUguCGACAUGCCAc -3'
miRNA:   3'- -UGCACGUCGCGCCAacGCUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 7414 0.71 0.371178
Target:  5'- cGCGUGCGGCaaGGUccgggUGCGGCAcgagcGCCGc -3'
miRNA:   3'- -UGCACGUCGcgCCA-----ACGCUGUa----CGGU- -5'
19131 3' -57.3 NC_004684.1 + 9025 0.69 0.434473
Target:  5'- cCGUGCGGgGCGGcaaccggcGCGGCAacGCCAg -3'
miRNA:   3'- uGCACGUCgCGCCaa------CGCUGUa-CGGU- -5'
19131 3' -57.3 NC_004684.1 + 11074 0.66 0.652608
Target:  5'- uCGcGCAGCGCGGUcuccacguccCGGCGcGCCAg -3'
miRNA:   3'- uGCaCGUCGCGCCAac--------GCUGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 11379 0.73 0.278133
Target:  5'- ---aGCAGCGUGGUggugcGCGACuUGCCGc -3'
miRNA:   3'- ugcaCGUCGCGCCAa----CGCUGuACGGU- -5'
19131 3' -57.3 NC_004684.1 + 14751 0.68 0.524219
Target:  5'- aGCGcaaGCAuGC-CGGUgaugGCGACGUGCCc -3'
miRNA:   3'- -UGCa--CGU-CGcGCCAa---CGCUGUACGGu -5'
19131 3' -57.3 NC_004684.1 + 16018 0.69 0.434473
Target:  5'- gACG-GUGGCGUGGUcGuUGACGUGCCc -3'
miRNA:   3'- -UGCaCGUCGCGCCAaC-GCUGUACGGu -5'
19131 3' -57.3 NC_004684.1 + 18145 0.68 0.513861
Target:  5'- gACGcGCcGCuGUGGg-GCGACGUGCCGa -3'
miRNA:   3'- -UGCaCGuCG-CGCCaaCGCUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 19445 0.67 0.587783
Target:  5'- cCGUGCgcccaugcccgGGCgGCGGUggcccgcGCGACAUGCg- -3'
miRNA:   3'- uGCACG-----------UCG-CGCCAa------CGCUGUACGgu -5'
19131 3' -57.3 NC_004684.1 + 19823 0.69 0.444017
Target:  5'- uCGU-CAGCGCGuGUgacgGCGgcGCAUGCCGg -3'
miRNA:   3'- uGCAcGUCGCGC-CAa---CGC--UGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 20497 0.68 0.503588
Target:  5'- --aUGCGGCGgGGUgcucgGCuGACAUGUCGc -3'
miRNA:   3'- ugcACGUCGCgCCAa----CG-CUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 24124 0.73 0.24522
Target:  5'- gACGUGguGCGCG---GCGACAUGgCCGu -3'
miRNA:   3'- -UGCACguCGCGCcaaCGCUGUAC-GGU- -5'
19131 3' -57.3 NC_004684.1 + 28745 0.76 0.155583
Target:  5'- gACGUGCGGUGCgaggacaaccGGUUcccgcuccaggucaGCGGCAUGCCAc -3'
miRNA:   3'- -UGCACGUCGCG----------CCAA--------------CGCUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 30262 0.7 0.388612
Target:  5'- gGCGgcGCAGUGCGcugGCGGCAcGCCAg -3'
miRNA:   3'- -UGCa-CGUCGCGCcaaCGCUGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 33477 0.7 0.379828
Target:  5'- gGCG-GCGGCuGCGGUggacGCGGCGgcgGCCc -3'
miRNA:   3'- -UGCaCGUCG-CGCCAa---CGCUGUa--CGGu -5'
19131 3' -57.3 NC_004684.1 + 39210 0.67 0.598547
Target:  5'- cACGUGCGccucGCGCaGGUUGC-ACGccaGCCAu -3'
miRNA:   3'- -UGCACGU----CGCG-CCAACGcUGUa--CGGU- -5'
19131 3' -57.3 NC_004684.1 + 41410 0.66 0.62989
Target:  5'- cCGUcGCGGUggcgucccccgugGCGGUggUGCGGCGgUGCCGc -3'
miRNA:   3'- uGCA-CGUCG-------------CGCCA--ACGCUGU-ACGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.