miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19131 3' -57.3 NC_004684.1 + 50029 0.66 0.630972
Target:  5'- gGCG-GCAGCGUGGccggUGCcuGGCuccagGCCAg -3'
miRNA:   3'- -UGCaCGUCGCGCCa---ACG--CUGua---CGGU- -5'
19131 3' -57.3 NC_004684.1 + 63526 0.67 0.555737
Target:  5'- gGCGUcGCAGCucGCGGgcGUGGCGcucgGCCu -3'
miRNA:   3'- -UGCA-CGUCG--CGCCaaCGCUGUa---CGGu -5'
19131 3' -57.3 NC_004684.1 + 19445 0.67 0.587783
Target:  5'- cCGUGCgcccaugcccgGGCgGCGGUggcccgcGCGACAUGCg- -3'
miRNA:   3'- uGCACG-----------UCG-CGCCAa------CGCUGUACGgu -5'
19131 3' -57.3 NC_004684.1 + 52315 0.67 0.587783
Target:  5'- cGCGcGCAgcuGCGCGG-UGCG-CAgGCCAg -3'
miRNA:   3'- -UGCaCGU---CGCGCCaACGCuGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 53896 0.67 0.598547
Target:  5'- uCGUGgGG-GUGGUUGUGACGgggGUCAg -3'
miRNA:   3'- uGCACgUCgCGCCAACGCUGUa--CGGU- -5'
19131 3' -57.3 NC_004684.1 + 45211 0.67 0.598547
Target:  5'- aGCG-GCAGCGCGuccaUGCGGCgcuugGUGCUg -3'
miRNA:   3'- -UGCaCGUCGCGCca--ACGCUG-----UACGGu -5'
19131 3' -57.3 NC_004684.1 + 60349 0.66 0.619069
Target:  5'- cGCGUucggccaGCGGUGCcaggucggucaGGUUG-GGCAUGCCGg -3'
miRNA:   3'- -UGCA-------CGUCGCG-----------CCAACgCUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 55852 0.66 0.620151
Target:  5'- uGCGUGCAGUGCGacguCGAC--GCCAa -3'
miRNA:   3'- -UGCACGUCGCGCcaacGCUGuaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 41410 0.66 0.62989
Target:  5'- cCGUcGCGGUggcgucccccgugGCGGUggUGCGGCGgUGCCGc -3'
miRNA:   3'- uGCA-CGUCG-------------CGCCA--ACGCUGU-ACGGU- -5'
19131 3' -57.3 NC_004684.1 + 56076 0.68 0.493406
Target:  5'- gGCGUGgaGGUGCuG-UGCGGCAUGCUg -3'
miRNA:   3'- -UGCACg-UCGCGcCaACGCUGUACGGu -5'
19131 3' -57.3 NC_004684.1 + 50710 0.68 0.493406
Target:  5'- -aGUGCGGUGCGGa-GUGugAUGCg- -3'
miRNA:   3'- ugCACGUCGCGCCaaCGCugUACGgu -5'
19131 3' -57.3 NC_004684.1 + 49183 0.68 0.483319
Target:  5'- gGCG-GCGGCgGCGGcgGCGGCcUGCUc -3'
miRNA:   3'- -UGCaCGUCG-CGCCaaCGCUGuACGGu -5'
19131 3' -57.3 NC_004684.1 + 28745 0.76 0.155583
Target:  5'- gACGUGCGGUGCgaggacaaccGGUUcccgcuccaggucaGCGGCAUGCCAc -3'
miRNA:   3'- -UGCACGUCGCG----------CCAA--------------CGCUGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 33477 0.7 0.379828
Target:  5'- gGCG-GCGGCuGCGGUggacGCGGCGgcgGCCc -3'
miRNA:   3'- -UGCaCGUCG-CGCCAa---CGCUGUa--CGGu -5'
19131 3' -57.3 NC_004684.1 + 46687 0.7 0.397529
Target:  5'- uGCGgugGCGGUGCGGUggcgcgcccugUGCGAgCGcGCCAc -3'
miRNA:   3'- -UGCa--CGUCGCGCCA-----------ACGCU-GUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 65540 0.7 0.406575
Target:  5'- gUGUGCAGCGCGGUgGCGuACccGUa- -3'
miRNA:   3'- uGCACGUCGCGCCAaCGC-UGuaCGgu -5'
19131 3' -57.3 NC_004684.1 + 16018 0.69 0.434473
Target:  5'- gACG-GUGGCGUGGUcGuUGACGUGCCc -3'
miRNA:   3'- -UGCaCGUCGCGCCAaC-GCUGUACGGu -5'
19131 3' -57.3 NC_004684.1 + 65442 0.69 0.438277
Target:  5'- gGCGUGCGGCGCGcGgccaccgUGCGccgguaccaggcccgGCAgGCCGg -3'
miRNA:   3'- -UGCACGUCGCGC-Ca------ACGC---------------UGUaCGGU- -5'
19131 3' -57.3 NC_004684.1 + 19823 0.69 0.444017
Target:  5'- uCGU-CAGCGCGuGUgacgGCGgcGCAUGCCGg -3'
miRNA:   3'- uGCAcGUCGCGC-CAa---CGC--UGUACGGU- -5'
19131 3' -57.3 NC_004684.1 + 45813 0.69 0.453677
Target:  5'- gGCGUGCGGCauugaccCGGUgacggccucgGCGGuCAUGCCGc -3'
miRNA:   3'- -UGCACGUCGc------GCCAa---------CGCU-GUACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.