miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19131 5' -59.3 NC_004684.1 + 56568 0.66 0.586409
Target:  5'- uCCUGCuCAcucGGUgCGGCCcaGCCGCCGg -3'
miRNA:   3'- -GGACGuGU---CCA-GCUGGacCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 3968 0.66 0.586409
Target:  5'- cCCgGC-CAGGUCauCCUGGCCGgUGg -3'
miRNA:   3'- -GGaCGuGUCCAGcuGGACCGGUgGCa -5'
19131 5' -59.3 NC_004684.1 + 63586 0.66 0.586409
Target:  5'- gCCUGCGCGGcG-CGGCggUGGUUACCGc -3'
miRNA:   3'- -GGACGUGUC-CaGCUGg-ACCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 52703 0.66 0.586409
Target:  5'- uCCUcGCGCccGUCGGCCUcGCCACgcuCGUa -3'
miRNA:   3'- -GGA-CGUGucCAGCUGGAcCGGUG---GCA- -5'
19131 5' -59.3 NC_004684.1 + 21692 0.66 0.583272
Target:  5'- gCCUGCggaagugcagaacgACAuGGUCGGCCUGuuCAUCGc -3'
miRNA:   3'- -GGACG--------------UGU-CCAGCUGGACcgGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 8879 0.66 0.580139
Target:  5'- gCCUGCugggacucggcuccaACAgcaaucauuGGUCGGCCUGGCagAUCGg -3'
miRNA:   3'- -GGACG---------------UGU---------CCAGCUGGACCGg-UGGCa -5'
19131 5' -59.3 NC_004684.1 + 36081 0.66 0.575966
Target:  5'- uCCUG-GCuGGUCuGCCcGGUCACCGa -3'
miRNA:   3'- -GGACgUGuCCAGcUGGaCCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 44649 0.66 0.575966
Target:  5'- uUUGCGCAGGUCcacgaACC-GGUCGCgCGUg -3'
miRNA:   3'- gGACGUGUCCAGc----UGGaCCGGUG-GCA- -5'
19131 5' -59.3 NC_004684.1 + 26490 0.66 0.575966
Target:  5'- aUCgGC-CAGGUCGcACUcgGGCCAuCCGUu -3'
miRNA:   3'- -GGaCGuGUCCAGC-UGGa-CCGGU-GGCA- -5'
19131 5' -59.3 NC_004684.1 + 28218 0.66 0.575966
Target:  5'- gCCUGCGCu-----ACCUGGCCGCCc- -3'
miRNA:   3'- -GGACGUGuccagcUGGACCGGUGGca -5'
19131 5' -59.3 NC_004684.1 + 51022 0.66 0.575966
Target:  5'- cCCUGCu--GGUCcACCggcaggaugcGGCCACCGc -3'
miRNA:   3'- -GGACGuguCCAGcUGGa---------CCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 46118 0.66 0.575966
Target:  5'- gCCggGCGCGcgugccgggguGGUUGACCUGGCgCACg-- -3'
miRNA:   3'- -GGa-CGUGU-----------CCAGCUGGACCG-GUGgca -5'
19131 5' -59.3 NC_004684.1 + 40242 0.66 0.574924
Target:  5'- aCUUGCcggucucgggGC-GGUCGACCUuguagaaGGCCACCc- -3'
miRNA:   3'- -GGACG----------UGuCCAGCUGGA-------CCGGUGGca -5'
19131 5' -59.3 NC_004684.1 + 6872 0.66 0.574924
Target:  5'- gCUGCACuggcucuggggcgAGGUCGucaACCUGGUgCGCCu- -3'
miRNA:   3'- gGACGUG-------------UCCAGC---UGGACCG-GUGGca -5'
19131 5' -59.3 NC_004684.1 + 47041 0.66 0.572842
Target:  5'- gCCUGCGCGgugacGGUgcaccgggcgacgcCGAUCucgaUGGCCGCCGc -3'
miRNA:   3'- -GGACGUGU-----CCA--------------GCUGG----ACCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 5003 0.66 0.569721
Target:  5'- aCCggGCGaAGGUgGACCuguggauggcaacggUGGCCACCa- -3'
miRNA:   3'- -GGa-CGUgUCCAgCUGG---------------ACCGGUGGca -5'
19131 5' -59.3 NC_004684.1 + 48952 0.66 0.568682
Target:  5'- uCCUGCuCGGGagccacgUCGgccgccggugcgcccGCCgGGCCGCCGa -3'
miRNA:   3'- -GGACGuGUCC-------AGC---------------UGGaCCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 57823 0.66 0.565567
Target:  5'- gCCUGguCccGG-CgGugCUGGCCGCCGg -3'
miRNA:   3'- -GGACguGu-CCaG-CugGACCGGUGGCa -5'
19131 5' -59.3 NC_004684.1 + 1056 0.66 0.565567
Target:  5'- --gGCACcGGUUGugCUGGCUGgCGg -3'
miRNA:   3'- ggaCGUGuCCAGCugGACCGGUgGCa -5'
19131 5' -59.3 NC_004684.1 + 62162 0.66 0.565567
Target:  5'- cCUUGCGCAGGgcucgcgUGACCcGGCCGauGa -3'
miRNA:   3'- -GGACGUGUCCa------GCUGGaCCGGUggCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.