miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19132 3' -55.9 NC_004684.1 + 7951 0.66 0.779763
Target:  5'- cGGcGCACaccGGugGGCaaGGCCGCcagGCGGc -3'
miRNA:   3'- -CCaCGUGa--CCugCUG--CCGGUGa--UGCU- -5'
19132 3' -55.9 NC_004684.1 + 26991 0.66 0.779763
Target:  5'- cGGUGCGagc-GCGGCGGgCGCgGCGAu -3'
miRNA:   3'- -CCACGUgaccUGCUGCCgGUGaUGCU- -5'
19132 3' -55.9 NC_004684.1 + 57195 0.66 0.779763
Target:  5'- cGG-GC-CUGGAaGGCGGCgGC-GCGAu -3'
miRNA:   3'- -CCaCGuGACCUgCUGCCGgUGaUGCU- -5'
19132 3' -55.9 NC_004684.1 + 35435 0.66 0.778791
Target:  5'- uGGUGaucgGCUGG-CGucggauuGCGGCCACggagaACGAg -3'
miRNA:   3'- -CCACg---UGACCuGC-------UGCCGGUGa----UGCU- -5'
19132 3' -55.9 NC_004684.1 + 18085 0.66 0.769978
Target:  5'- gGGUcGaucCUGGACGGCaaGGCCACcgagcGCGAg -3'
miRNA:   3'- -CCA-Cgu-GACCUGCUG--CCGGUGa----UGCU- -5'
19132 3' -55.9 NC_004684.1 + 27859 0.66 0.769978
Target:  5'- uGUGCACgcaGGAgUGcCGGUCGCUGCu- -3'
miRNA:   3'- cCACGUGa--CCU-GCuGCCGGUGAUGcu -5'
19132 3' -55.9 NC_004684.1 + 65775 0.66 0.769978
Target:  5'- --cGCGCcGGugGGCGcGCgCACgGCGAc -3'
miRNA:   3'- ccaCGUGaCCugCUGC-CG-GUGaUGCU- -5'
19132 3' -55.9 NC_004684.1 + 37246 0.66 0.760057
Target:  5'- ---cCACUGGcCGACGcGCaCACUGCGc -3'
miRNA:   3'- ccacGUGACCuGCUGC-CG-GUGAUGCu -5'
19132 3' -55.9 NC_004684.1 + 26677 0.66 0.760057
Target:  5'- --cGCGCUGGuCGuccCGGCCACcGCc- -3'
miRNA:   3'- ccaCGUGACCuGCu--GCCGGUGaUGcu -5'
19132 3' -55.9 NC_004684.1 + 23141 0.66 0.750013
Target:  5'- --gGCuuCcGGGCGGCGGCCAacuuugGCGAg -3'
miRNA:   3'- ccaCGu-GaCCUGCUGCCGGUga----UGCU- -5'
19132 3' -55.9 NC_004684.1 + 65513 0.66 0.750013
Target:  5'- aGGUGCucGCUGGAUccuuCGGCCAgguggauaUGCGGc -3'
miRNA:   3'- -CCACG--UGACCUGcu--GCCGGUg-------AUGCU- -5'
19132 3' -55.9 NC_004684.1 + 56879 0.66 0.739854
Target:  5'- cGGUGCGcCUGaccguCGGCGGcCCAgUGCGu -3'
miRNA:   3'- -CCACGU-GACcu---GCUGCC-GGUgAUGCu -5'
19132 3' -55.9 NC_004684.1 + 61367 0.66 0.739854
Target:  5'- --gGCGCUGG-CGGCcuaaaGGCCACcGCGu -3'
miRNA:   3'- ccaCGUGACCuGCUG-----CCGGUGaUGCu -5'
19132 3' -55.9 NC_004684.1 + 22343 0.66 0.739854
Target:  5'- cGGUacagGCGgUGG-CGGCGGCgGCgGCGGu -3'
miRNA:   3'- -CCA----CGUgACCuGCUGCCGgUGaUGCU- -5'
19132 3' -55.9 NC_004684.1 + 10505 0.66 0.729593
Target:  5'- --cGCACUGGGCcgccGACGGUCAgcGCGc -3'
miRNA:   3'- ccaCGUGACCUG----CUGCCGGUgaUGCu -5'
19132 3' -55.9 NC_004684.1 + 11149 0.66 0.729593
Target:  5'- uGGUcGCGCcgucGGugGACcuGGCCGCcaGCGAg -3'
miRNA:   3'- -CCA-CGUGa---CCugCUG--CCGGUGa-UGCU- -5'
19132 3' -55.9 NC_004684.1 + 21860 0.66 0.729593
Target:  5'- cGGUGCGCcggucgaagaggUGGAUGAgcagggccaGGCCAUcGCGGu -3'
miRNA:   3'- -CCACGUG------------ACCUGCUg--------CCGGUGaUGCU- -5'
19132 3' -55.9 NC_004684.1 + 19446 0.66 0.729593
Target:  5'- cGUGCGCccaugcccGGGCGGCGGUgGCccgcGCGAc -3'
miRNA:   3'- cCACGUGa-------CCUGCUGCCGgUGa---UGCU- -5'
19132 3' -55.9 NC_004684.1 + 1074 0.67 0.723391
Target:  5'- uGGcgGCGCUGGACGugaucggugaccaGGCCGCgacccgGCGc -3'
miRNA:   3'- -CCa-CGUGACCUGCug-----------CCGGUGa-----UGCu -5'
19132 3' -55.9 NC_004684.1 + 45260 0.67 0.719239
Target:  5'- --aGCGCUGGuCG-CGGCCcUUGCGu -3'
miRNA:   3'- ccaCGUGACCuGCuGCCGGuGAUGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.