miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19132 5' -61.7 NC_004684.1 + 15056 0.66 0.454323
Target:  5'- -gCUGGAuccGAuucGCUGGCCUGCGcaccGCGCa -3'
miRNA:   3'- cgGACCUc--CU---CGACCGGAUGC----CGCGc -5'
19132 5' -61.7 NC_004684.1 + 4632 0.66 0.454323
Target:  5'- cGCCgcaGGAGG-GCaaguccaccaUGGCCU-CGGUGUa -3'
miRNA:   3'- -CGGa--CCUCCuCG----------ACCGGAuGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 64314 0.66 0.454323
Target:  5'- aCCgGGAgcacGGAGCgggGGUCgaucauCGGCGCGc -3'
miRNA:   3'- cGGaCCU----CCUCGa--CCGGau----GCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 29102 0.66 0.445004
Target:  5'- gGCCUGGAGccguGAGCUGcGCCagACcagcacGUGCGa -3'
miRNA:   3'- -CGGACCUC----CUCGAC-CGGa-UGc-----CGCGC- -5'
19132 5' -61.7 NC_004684.1 + 25538 0.66 0.445004
Target:  5'- cGCCgGGucGGuGCUcaaGaGCCU-CGGCGCGg -3'
miRNA:   3'- -CGGaCCu-CCuCGA---C-CGGAuGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 44047 0.66 0.442229
Target:  5'- uCCUGGAGGAucggcuuccacuccGCgaUGGCCUgGCGGCc-- -3'
miRNA:   3'- cGGACCUCCU--------------CG--ACCGGA-UGCCGcgc -5'
19132 5' -61.7 NC_004684.1 + 17486 0.66 0.435793
Target:  5'- aCCUGGugcAGGAGCUGauuacgcaGCUgcGCGaGCGCGg -3'
miRNA:   3'- cGGACC---UCCUCGAC--------CGGa-UGC-CGCGC- -5'
19132 5' -61.7 NC_004684.1 + 24906 0.66 0.433964
Target:  5'- gGCCUGGucguuggacAGGAuGCcgaaggUGGCCaggaacgacagaGCGGCGCGa -3'
miRNA:   3'- -CGGACC---------UCCU-CG------ACCGGa-----------UGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 61176 0.66 0.426692
Target:  5'- gGCCaGGucggcGGGGUuggUGGCCU-CGGCGUa -3'
miRNA:   3'- -CGGaCCu----CCUCG---ACCGGAuGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 6685 0.66 0.426692
Target:  5'- gGCCUGcacAGGucgacCUGGCCaccguCGGCGCGa -3'
miRNA:   3'- -CGGACc--UCCuc---GACCGGau---GCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 1059 0.66 0.426692
Target:  5'- aCC-GGuuGuGCUGGCUgGCGGCGCu -3'
miRNA:   3'- cGGaCCucCuCGACCGGaUGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 65344 0.66 0.421287
Target:  5'- gGCgCUGGccguaguccacgaacAGGGcGCUGGCCUGgucaacguCGGgGCGg -3'
miRNA:   3'- -CG-GACC---------------UCCU-CGACCGGAU--------GCCgCGC- -5'
19132 5' -61.7 NC_004684.1 + 15064 0.66 0.417706
Target:  5'- cGCC-GGAuGAGgUcgacGGCCUuauCGGCGCGg -3'
miRNA:   3'- -CGGaCCUcCUCgA----CCGGAu--GCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 57822 0.66 0.417706
Target:  5'- gGCCUGGucccggcGGuGCUGGCCgcCGGUa-- -3'
miRNA:   3'- -CGGACCu------CCuCGACCGGauGCCGcgc -5'
19132 5' -61.7 NC_004684.1 + 32086 0.66 0.417706
Target:  5'- cGUCUGGGuGAGCguUGGCCagGCGGUGg- -3'
miRNA:   3'- -CGGACCUcCUCG--ACCGGa-UGCCGCgc -5'
19132 5' -61.7 NC_004684.1 + 7985 0.66 0.408836
Target:  5'- gGCa-GGAGGAcGCcuggaaGGCCUACGaCGCGg -3'
miRNA:   3'- -CGgaCCUCCU-CGa-----CCGGAUGCcGCGC- -5'
19132 5' -61.7 NC_004684.1 + 30576 0.66 0.408836
Target:  5'- --gUGGuGGAGCUGGUCUG-GGUGUc -3'
miRNA:   3'- cggACCuCCUCGACCGGAUgCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 31655 0.67 0.400084
Target:  5'- cGCC---GGGAcGCUGGCaCUgucgGCGGUGCGg -3'
miRNA:   3'- -CGGaccUCCU-CGACCG-GA----UGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 15527 0.67 0.400084
Target:  5'- gGCCuUGGAGGuGCUGGa----GGUGCa -3'
miRNA:   3'- -CGG-ACCUCCuCGACCggaugCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 31548 0.67 0.400084
Target:  5'- gGCCUGcGGGGAGau-GCCUacgucgaagcugGCGGCGUc -3'
miRNA:   3'- -CGGAC-CUCCUCgacCGGA------------UGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.