miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19132 5' -61.7 NC_004684.1 + 6825 1.1 0.000263
Target:  5'- gGCCUGGAGGAGCUGGCCUACGGCGCGa -3'
miRNA:   3'- -CGGACCUCCUCGACCGGAUGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 55653 0.77 0.075629
Target:  5'- uGCgUGGAGGAG--GGCCUgGCGGCGCa -3'
miRNA:   3'- -CGgACCUCCUCgaCCGGA-UGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 2120 0.75 0.113371
Target:  5'- gGCgUGGucGGAGCUGGaCCUGCgugcguucGGCGCGu -3'
miRNA:   3'- -CGgACCu-CCUCGACC-GGAUG--------CCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 60193 0.74 0.139756
Target:  5'- gGCCUGGcAGGAugugcugaucggcGUUGGCCU-CGGCGUu -3'
miRNA:   3'- -CGGACC-UCCU-------------CGACCGGAuGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 53410 0.73 0.147665
Target:  5'- --gUGGccGGGCUGGCCUGCGccGCGCGa -3'
miRNA:   3'- cggACCucCUCGACCGGAUGC--CGCGC- -5'
19132 5' -61.7 NC_004684.1 + 12065 0.73 0.153162
Target:  5'- cGCCUGGccgccgagcgcgacgAGGuGCUGGCCcgcGCGGCGg- -3'
miRNA:   3'- -CGGACC---------------UCCuCGACCGGa--UGCCGCgc -5'
19132 5' -61.7 NC_004684.1 + 11822 0.72 0.167723
Target:  5'- uGCCUGGAcccccggccaccgGGccacGGC-GGCCaGCGGCGCGa -3'
miRNA:   3'- -CGGACCU-------------CC----UCGaCCGGaUGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 21624 0.72 0.168157
Target:  5'- cGCCUGGAGGuGC--GCCUGCcaaccgagcaGGCGCu -3'
miRNA:   3'- -CGGACCUCCuCGacCGGAUG----------CCGCGc -5'
19132 5' -61.7 NC_004684.1 + 57113 0.72 0.17255
Target:  5'- aCCUGGAGcGAccGCUGGCagcACuGGCGCGg -3'
miRNA:   3'- cGGACCUC-CU--CGACCGga-UG-CCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 14664 0.72 0.17255
Target:  5'- aCCUGGAGGAcaGC--GCCUACGaGCGUGg -3'
miRNA:   3'- cGGACCUCCU--CGacCGGAUGC-CGCGC- -5'
19132 5' -61.7 NC_004684.1 + 23687 0.72 0.186349
Target:  5'- gGCCcGGAccaGAGCgUGGCCUccaaccugggcgGCGGCGCGc -3'
miRNA:   3'- -CGGaCCUc--CUCG-ACCGGA------------UGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 2049 0.72 0.19116
Target:  5'- cCCUGGGGGccGCcaucgUGGCCUGCcuGGCGCu -3'
miRNA:   3'- cGGACCUCCu-CG-----ACCGGAUG--CCGCGc -5'
19132 5' -61.7 NC_004684.1 + 56930 0.71 0.195584
Target:  5'- uGCCUGGAGcgcgcccGGGaCUGGUgcACGGCGCa -3'
miRNA:   3'- -CGGACCUC-------CUC-GACCGgaUGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 37683 0.71 0.206253
Target:  5'- gGUCUGGAGGuuCUGGCCcACGacguugacGCGCGc -3'
miRNA:   3'- -CGGACCUCCucGACCGGaUGC--------CGCGC- -5'
19132 5' -61.7 NC_004684.1 + 61092 0.71 0.208342
Target:  5'- gGCCUGGuggaccuggaccAGGAGCUGGCCaGCuacgacaccaagaugGGCGaCGc -3'
miRNA:   3'- -CGGACC------------UCCUCGACCGGaUG---------------CCGC-GC- -5'
19132 5' -61.7 NC_004684.1 + 65732 0.71 0.216879
Target:  5'- uCCagGGAGucGAGCUGGCCccacUugGGCGCc -3'
miRNA:   3'- cGGa-CCUC--CUCGACCGG----AugCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 14191 0.71 0.222366
Target:  5'- cCCUGGAcgcauucCUGGCCaGCGGCGCGg -3'
miRNA:   3'- cGGACCUccuc---GACCGGaUGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 54461 0.7 0.227971
Target:  5'- uGCCgacGGcGGcgaAGUUGGCCgACGGCGCa -3'
miRNA:   3'- -CGGa--CCuCC---UCGACCGGaUGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 65426 0.7 0.251592
Target:  5'- cGCCaGGcgcuGcGCUGGCgUGCGGCGCGc -3'
miRNA:   3'- -CGGaCCuc--CuCGACCGgAUGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 13132 0.7 0.257804
Target:  5'- gGCgCUGGcugAGGAGCUGuCC--CGGCGCGg -3'
miRNA:   3'- -CG-GACC---UCCUCGACcGGauGCCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.