miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19132 5' -61.7 NC_004684.1 + 52884 0.68 0.334533
Target:  5'- uGCCggUGGcagcacccAGGAGCguccGGCCagcacgGCGGCGUGg -3'
miRNA:   3'- -CGG--ACC--------UCCUCGa---CCGGa-----UGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 41627 0.69 0.270603
Target:  5'- gGCCUgaaauaccaGGAGGAGaucGCCUcCGGUGCGg -3'
miRNA:   3'- -CGGA---------CCUCCUCgacCGGAuGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 44630 0.69 0.279864
Target:  5'- cGCCgGGGGGAGCggguacucGGCCcacugcgucacccgcUgcugcgGCGGCGCGa -3'
miRNA:   3'- -CGGaCCUCCUCGa-------CCGG---------------A------UGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 65722 0.69 0.300553
Target:  5'- gGCCUGGuGGGcgaaaaacgccacgaAGUUGGCCUcGCGG-GCGu -3'
miRNA:   3'- -CGGACC-UCC---------------UCGACCGGA-UGCCgCGC- -5'
19132 5' -61.7 NC_004684.1 + 4380 0.69 0.30483
Target:  5'- cCCcGGAGGccgAGCUGGUCUAUcGCGCc -3'
miRNA:   3'- cGGaCCUCC---UCGACCGGAUGcCGCGc -5'
19132 5' -61.7 NC_004684.1 + 22275 0.69 0.30483
Target:  5'- cGCCUGGcGGcGGCcaaGGCCcgcGCGGCgGCGg -3'
miRNA:   3'- -CGGACCuCC-UCGa--CCGGa--UGCCG-CGC- -5'
19132 5' -61.7 NC_004684.1 + 7490 0.68 0.312061
Target:  5'- gGCCUGGcuGGuugucuacgcGCUGGCCgcCGcGCGCGu -3'
miRNA:   3'- -CGGACCu-CCu---------CGACCGGauGC-CGCGC- -5'
19132 5' -61.7 NC_004684.1 + 23769 0.68 0.319422
Target:  5'- gGCCgUGG-GGcGC-GGCgUugGGCGCGa -3'
miRNA:   3'- -CGG-ACCuCCuCGaCCGgAugCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 38822 0.68 0.333765
Target:  5'- cGCCUGGcGGuGCccgacGGCCUGguggcccUGGCGCu -3'
miRNA:   3'- -CGGACCuCCuCGa----CCGGAU-------GCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 19341 0.69 0.270603
Target:  5'- gGCCgagcgGGAGGcGCUGauCCaGCGGCGCa -3'
miRNA:   3'- -CGGa----CCUCCuCGACc-GGaUGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 11604 0.7 0.264141
Target:  5'- cGCCUGGAcgacggcaccGAGCUGGCCguCGGcCGCc -3'
miRNA:   3'- -CGGACCUc---------CUCGACCGGauGCC-GCGc -5'
19132 5' -61.7 NC_004684.1 + 65426 0.7 0.251592
Target:  5'- cGCCaGGcgcuGcGCUGGCgUGCGGCGCGc -3'
miRNA:   3'- -CGGaCCuc--CuCGACCGgAUGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 55653 0.77 0.075629
Target:  5'- uGCgUGGAGGAG--GGCCUgGCGGCGCa -3'
miRNA:   3'- -CGgACCUCCUCgaCCGGA-UGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 2120 0.75 0.113371
Target:  5'- gGCgUGGucGGAGCUGGaCCUGCgugcguucGGCGCGu -3'
miRNA:   3'- -CGgACCu-CCUCGACC-GGAUG--------CCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 60193 0.74 0.139756
Target:  5'- gGCCUGGcAGGAugugcugaucggcGUUGGCCU-CGGCGUu -3'
miRNA:   3'- -CGGACC-UCCU-------------CGACCGGAuGCCGCGc -5'
19132 5' -61.7 NC_004684.1 + 12065 0.73 0.153162
Target:  5'- cGCCUGGccgccgagcgcgacgAGGuGCUGGCCcgcGCGGCGg- -3'
miRNA:   3'- -CGGACC---------------UCCuCGACCGGa--UGCCGCgc -5'
19132 5' -61.7 NC_004684.1 + 21624 0.72 0.168157
Target:  5'- cGCCUGGAGGuGC--GCCUGCcaaccgagcaGGCGCu -3'
miRNA:   3'- -CGGACCUCCuCGacCGGAUG----------CCGCGc -5'
19132 5' -61.7 NC_004684.1 + 57113 0.72 0.17255
Target:  5'- aCCUGGAGcGAccGCUGGCagcACuGGCGCGg -3'
miRNA:   3'- cGGACCUC-CU--CGACCGga-UG-CCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 23687 0.72 0.186349
Target:  5'- gGCCcGGAccaGAGCgUGGCCUccaaccugggcgGCGGCGCGc -3'
miRNA:   3'- -CGGaCCUc--CUCG-ACCGGA------------UGCCGCGC- -5'
19132 5' -61.7 NC_004684.1 + 56930 0.71 0.195584
Target:  5'- uGCCUGGAGcgcgcccGGGaCUGGUgcACGGCGCa -3'
miRNA:   3'- -CGGACCUC-------CUC-GACCGgaUGCCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.