miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19133 3' -55.8 NC_004684.1 + 61543 0.66 0.740631
Target:  5'- uGGcgUGCCGCUGGUugguccggguGCGGCAgcacucGCGCa -3'
miRNA:   3'- uUCaaGCGGUGGCCGu---------UGCCGU------UGCG- -5'
19133 3' -55.8 NC_004684.1 + 22562 0.66 0.740631
Target:  5'- cGGUaUCGCCACauCGGUcgguACGGCggUGUu -3'
miRNA:   3'- uUCA-AGCGGUG--GCCGu---UGCCGuuGCG- -5'
19133 3' -55.8 NC_004684.1 + 12222 0.66 0.740631
Target:  5'- cGGGUUCcgguacguGCCGCC--CGACGGCGGCGa -3'
miRNA:   3'- -UUCAAG--------CGGUGGccGUUGCCGUUGCg -5'
19133 3' -55.8 NC_004684.1 + 6786 0.66 0.740631
Target:  5'- ---aUCGCCggugcACUGGaCGACGGCcacuacGACGCc -3'
miRNA:   3'- uucaAGCGG-----UGGCC-GUUGCCG------UUGCG- -5'
19133 3' -55.8 NC_004684.1 + 19446 0.66 0.740631
Target:  5'- -cGUgCGCCcauGCCcgGGCGGCGGUGgcccGCGCg -3'
miRNA:   3'- uuCAaGCGG---UGG--CCGUUGCCGU----UGCG- -5'
19133 3' -55.8 NC_004684.1 + 40902 0.66 0.74063
Target:  5'- -cGUgcUCGCCA--GGC-AUGGCAugGCg -3'
miRNA:   3'- uuCA--AGCGGUggCCGuUGCCGUugCG- -5'
19133 3' -55.8 NC_004684.1 + 19597 0.66 0.74063
Target:  5'- -uGUUCGCCGCCGagaaCAuccUGGCcgacuGACGCa -3'
miRNA:   3'- uuCAAGCGGUGGCc---GUu--GCCG-----UUGCG- -5'
19133 3' -55.8 NC_004684.1 + 8970 0.66 0.74063
Target:  5'- -----gGCCGgaGGCAACGGCGGgGUu -3'
miRNA:   3'- uucaagCGGUggCCGUUGCCGUUgCG- -5'
19133 3' -55.8 NC_004684.1 + 27045 0.66 0.74063
Target:  5'- cAAGgcCGCCGCCaGCGACcugccCAGCGCc -3'
miRNA:   3'- -UUCaaGCGGUGGcCGUUGcc---GUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 39527 0.66 0.74063
Target:  5'- cGAGca-GCgACCGGCAcuccuGCGuGCAcaGCGCg -3'
miRNA:   3'- -UUCaagCGgUGGCCGU-----UGC-CGU--UGCG- -5'
19133 3' -55.8 NC_004684.1 + 30409 0.66 0.730207
Target:  5'- ----gCGCUGCCguGGCAacaccuguucgACGGCGGCGUg -3'
miRNA:   3'- uucaaGCGGUGG--CCGU-----------UGCCGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 11685 0.66 0.730207
Target:  5'- ----aCGUCGCCGGauACGGCugucGCGCu -3'
miRNA:   3'- uucaaGCGGUGGCCguUGCCGu---UGCG- -5'
19133 3' -55.8 NC_004684.1 + 9287 0.66 0.730207
Target:  5'- cGAGUUC-CCGaCGcCGACGGUGGCGCu -3'
miRNA:   3'- -UUCAAGcGGUgGCcGUUGCCGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 2298 0.66 0.730207
Target:  5'- ----aCGCCACCcuGCucGACGGCAugaucaccGCGCa -3'
miRNA:   3'- uucaaGCGGUGGc-CG--UUGCCGU--------UGCG- -5'
19133 3' -55.8 NC_004684.1 + 43663 0.66 0.730207
Target:  5'- cAGUgCGCCGCCaGCGAUGuugAGCGCg -3'
miRNA:   3'- uUCAaGCGGUGGcCGUUGCcg-UUGCG- -5'
19133 3' -55.8 NC_004684.1 + 62596 0.66 0.730207
Target:  5'- ----cUGCgCGCCGGUcAUGGCGucGCGCa -3'
miRNA:   3'- uucaaGCG-GUGGCCGuUGCCGU--UGCG- -5'
19133 3' -55.8 NC_004684.1 + 5211 0.66 0.730207
Target:  5'- -uGUUCGCCAucaUCGGCcg-GGUcACGCg -3'
miRNA:   3'- uuCAAGCGGU---GGCCGuugCCGuUGCG- -5'
19133 3' -55.8 NC_004684.1 + 25395 0.66 0.730207
Target:  5'- gGAGguugUCGCCAgCGGCcaccgcGCGGgCAuagaACGCc -3'
miRNA:   3'- -UUCa---AGCGGUgGCCGu-----UGCC-GU----UGCG- -5'
19133 3' -55.8 NC_004684.1 + 57391 0.66 0.730207
Target:  5'- cAGGUcCGgCAguuCCGGCAACGGgAugccgaGCGCg -3'
miRNA:   3'- -UUCAaGCgGU---GGCCGUUGCCgU------UGCG- -5'
19133 3' -55.8 NC_004684.1 + 61921 0.66 0.730207
Target:  5'- -cGUUcCGUCGCCGGuCAGuguccCGGCAAUGa -3'
miRNA:   3'- uuCAA-GCGGUGGCC-GUU-----GCCGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.