miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19133 3' -55.8 NC_004684.1 + 22562 0.66 0.740631
Target:  5'- cGGUaUCGCCACauCGGUcgguACGGCggUGUu -3'
miRNA:   3'- uUCA-AGCGGUG--GCCGu---UGCCGuuGCG- -5'
19133 3' -55.8 NC_004684.1 + 25801 0.66 0.698404
Target:  5'- -uGUUCGUCACCaacuggccgGGUGGCGGCcagAACGg -3'
miRNA:   3'- uuCAAGCGGUGG---------CCGUUGCCG---UUGCg -5'
19133 3' -55.8 NC_004684.1 + 46909 0.66 0.719688
Target:  5'- ----cCGCCgcaucccccaggACCGGcCAACGGCggUGUg -3'
miRNA:   3'- uucaaGCGG------------UGGCC-GUUGCCGuuGCG- -5'
19133 3' -55.8 NC_004684.1 + 9287 0.66 0.730207
Target:  5'- cGAGUUC-CCGaCGcCGACGGUGGCGCu -3'
miRNA:   3'- -UUCAAGcGGUgGCcGUUGCCGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 35795 0.66 0.730207
Target:  5'- -cGUggCGCaguccCCGGCGACGGUggucauucacGACGCc -3'
miRNA:   3'- uuCAa-GCGgu---GGCCGUUGCCG----------UUGCG- -5'
19133 3' -55.8 NC_004684.1 + 30409 0.66 0.730207
Target:  5'- ----gCGCUGCCguGGCAacaccuguucgACGGCGGCGUg -3'
miRNA:   3'- uucaaGCGGUGG--CCGU-----------UGCCGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 61543 0.66 0.740631
Target:  5'- uGGcgUGCCGCUGGUugguccggguGCGGCAgcacucGCGCa -3'
miRNA:   3'- uUCaaGCGGUGGCCGu---------UGCCGU------UGCG- -5'
19133 3' -55.8 NC_004684.1 + 27045 0.66 0.74063
Target:  5'- cAAGgcCGCCGCCaGCGACcugccCAGCGCc -3'
miRNA:   3'- -UUCaaGCGGUGGcCGUUGcc---GUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 15395 0.66 0.698404
Target:  5'- cGAGgcCGCCAUCGG-GGCGGCca-GCa -3'
miRNA:   3'- -UUCaaGCGGUGGCCgUUGCCGuugCG- -5'
19133 3' -55.8 NC_004684.1 + 10706 0.66 0.698404
Target:  5'- cGGUggcUCGCaACCGGCAG-GGCAGC-Ca -3'
miRNA:   3'- uUCA---AGCGgUGGCCGUUgCCGUUGcG- -5'
19133 3' -55.8 NC_004684.1 + 58759 0.66 0.709083
Target:  5'- ---gUUGCC-CUGGCggUGGCugcacuGCGCa -3'
miRNA:   3'- uucaAGCGGuGGCCGuuGCCGu-----UGCG- -5'
19133 3' -55.8 NC_004684.1 + 12222 0.66 0.740631
Target:  5'- cGGGUUCcgguacguGCCGCC--CGACGGCGGCGa -3'
miRNA:   3'- -UUCAAG--------CGGUGGccGUUGCCGUUGCg -5'
19133 3' -55.8 NC_004684.1 + 56510 0.66 0.698404
Target:  5'- cGGGUg-GUCACCGGCGuCGGUGAgGUc -3'
miRNA:   3'- -UUCAagCGGUGGCCGUuGCCGUUgCG- -5'
19133 3' -55.8 NC_004684.1 + 60902 0.66 0.719688
Target:  5'- cAGUucaUCGaCCAucUCGGCcACGGCGuCGCa -3'
miRNA:   3'- uUCA---AGC-GGU--GGCCGuUGCCGUuGCG- -5'
19133 3' -55.8 NC_004684.1 + 46237 0.66 0.719688
Target:  5'- -cGUggaaGCCuuCGGCAcCGGCGugGUg -3'
miRNA:   3'- uuCAag--CGGugGCCGUuGCCGUugCG- -5'
19133 3' -55.8 NC_004684.1 + 62982 0.66 0.698404
Target:  5'- uGGUgcgcaCGUgGCCGGUGGcCGGgAACGCg -3'
miRNA:   3'- uUCAa----GCGgUGGCCGUU-GCCgUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 19446 0.66 0.740631
Target:  5'- -cGUgCGCCcauGCCcgGGCGGCGGUGgcccGCGCg -3'
miRNA:   3'- uuCAaGCGG---UGG--CCGUUGCCGU----UGCG- -5'
19133 3' -55.8 NC_004684.1 + 4027 0.66 0.698404
Target:  5'- ----cCGuUCACCGGC-AUGGCGACGg -3'
miRNA:   3'- uucaaGC-GGUGGCCGuUGCCGUUGCg -5'
19133 3' -55.8 NC_004684.1 + 6786 0.66 0.740631
Target:  5'- ---aUCGCCggugcACUGGaCGACGGCcacuacGACGCc -3'
miRNA:   3'- uucaAGCGG-----UGGCC-GUUGCCG------UUGCG- -5'
19133 3' -55.8 NC_004684.1 + 47310 0.66 0.719688
Target:  5'- uGGUUgGCCgucaccgugucGCCGGUGugGGCGucgaGCa -3'
miRNA:   3'- uUCAAgCGG-----------UGGCCGUugCCGUug--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.