miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19133 3' -55.8 NC_004684.1 + 11685 0.66 0.730207
Target:  5'- ----aCGUCGCCGGauACGGCugucGCGCu -3'
miRNA:   3'- uucaaGCGGUGGCCguUGCCGu---UGCG- -5'
19133 3' -55.8 NC_004684.1 + 61921 0.66 0.730207
Target:  5'- -cGUUcCGUCGCCGGuCAGuguccCGGCAAUGa -3'
miRNA:   3'- uuCAA-GCGGUGGCC-GUU-----GCCGUUGCg -5'
19133 3' -55.8 NC_004684.1 + 27185 0.66 0.729159
Target:  5'- -uGUUCGUCAagcucCUGGUcagcgacAGCGaGCAGCGCa -3'
miRNA:   3'- uuCAAGCGGU-----GGCCG-------UUGC-CGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 46909 0.66 0.719688
Target:  5'- ----cCGCCgcaucccccaggACCGGcCAACGGCggUGUg -3'
miRNA:   3'- uucaaGCGG------------UGGCC-GUUGCCGuuGCG- -5'
19133 3' -55.8 NC_004684.1 + 46237 0.66 0.719688
Target:  5'- -cGUggaaGCCuuCGGCAcCGGCGugGUg -3'
miRNA:   3'- uuCAag--CGGugGCCGUuGCCGUugCG- -5'
19133 3' -55.8 NC_004684.1 + 60902 0.66 0.719688
Target:  5'- cAGUucaUCGaCCAucUCGGCcACGGCGuCGCa -3'
miRNA:   3'- uUCA---AGC-GGU--GGCCGuUGCCGUuGCG- -5'
19133 3' -55.8 NC_004684.1 + 47310 0.66 0.719688
Target:  5'- uGGUUgGCCgucaccgugucGCCGGUGugGGCGucgaGCa -3'
miRNA:   3'- uUCAAgCGG-----------UGGCCGUugCCGUug--CG- -5'
19133 3' -55.8 NC_004684.1 + 64818 0.66 0.719687
Target:  5'- cGGGUcggGCaCACCGGCcuCGGCGaaggccuccGCGCg -3'
miRNA:   3'- -UUCAag-CG-GUGGCCGuuGCCGU---------UGCG- -5'
19133 3' -55.8 NC_004684.1 + 61436 0.66 0.719687
Target:  5'- ---gUCGCuCACCGGCG-CGGCcAgGUu -3'
miRNA:   3'- uucaAGCG-GUGGCCGUuGCCGuUgCG- -5'
19133 3' -55.8 NC_004684.1 + 22523 0.66 0.719687
Target:  5'- cGGUgcgCGaCC-CCGGCAugGGUAucgaGCa -3'
miRNA:   3'- uUCAa--GC-GGuGGCCGUugCCGUug--CG- -5'
19133 3' -55.8 NC_004684.1 + 35081 0.66 0.719687
Target:  5'- -cGUUgGUgugCACCGGCGucaGGCAcaGCGCc -3'
miRNA:   3'- uuCAAgCG---GUGGCCGUug-CCGU--UGCG- -5'
19133 3' -55.8 NC_004684.1 + 4802 0.66 0.719687
Target:  5'- cGGUg-GCCgACC-GCAACGGCAAgGUg -3'
miRNA:   3'- uUCAagCGG-UGGcCGUUGCCGUUgCG- -5'
19133 3' -55.8 NC_004684.1 + 58759 0.66 0.709083
Target:  5'- ---gUUGCC-CUGGCggUGGCugcacuGCGCa -3'
miRNA:   3'- uucaAGCGGuGGCCGuuGCCGu-----UGCG- -5'
19133 3' -55.8 NC_004684.1 + 17345 0.66 0.709082
Target:  5'- cGGUUCcugGCCuggaGCCaGGCAcCGGCcACGCu -3'
miRNA:   3'- uUCAAG---CGG----UGG-CCGUuGCCGuUGCG- -5'
19133 3' -55.8 NC_004684.1 + 31163 0.66 0.709082
Target:  5'- ----aCGCCAgcggucUCGGCggUGGCcACGCu -3'
miRNA:   3'- uucaaGCGGU------GGCCGuuGCCGuUGCG- -5'
19133 3' -55.8 NC_004684.1 + 43026 0.66 0.709082
Target:  5'- --uUUCGCCgACCuuGGUGAUGGUGGCGUc -3'
miRNA:   3'- uucAAGCGG-UGG--CCGUUGCCGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 43203 0.66 0.709082
Target:  5'- ----cCGCaggCACCGGCAuuuugggcgGCGGCAcCGCc -3'
miRNA:   3'- uucaaGCG---GUGGCCGU---------UGCCGUuGCG- -5'
19133 3' -55.8 NC_004684.1 + 65301 0.66 0.709082
Target:  5'- uAGUgcugCGCCACCaGUuGCGaGCuGGCGCg -3'
miRNA:   3'- uUCAa---GCGGUGGcCGuUGC-CG-UUGCG- -5'
19133 3' -55.8 NC_004684.1 + 3698 0.66 0.702684
Target:  5'- gGAGaUCGCCagcgccgccgcgcugGCCGGUAucaACGcuucGCAACGCu -3'
miRNA:   3'- -UUCaAGCGG---------------UGGCCGU---UGC----CGUUGCG- -5'
19133 3' -55.8 NC_004684.1 + 25801 0.66 0.698404
Target:  5'- -uGUUCGUCACCaacuggccgGGUGGCGGCcagAACGg -3'
miRNA:   3'- uuCAAGCGGUGG---------CCGUUGCCG---UUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.