miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19133 5' -55.6 NC_004684.1 + 30859 0.66 0.729617
Target:  5'- aGCGcGGUGAcgGCaGGCGAUGuGUGGu- -3'
miRNA:   3'- -UGCuCCACUa-CGaCCGCUAC-CGCUua -5'
19133 5' -55.6 NC_004684.1 + 36431 0.66 0.729617
Target:  5'- uCGuGGUGGacgacgacccUGCUGGCGugaccAUGGUGGAc -3'
miRNA:   3'- uGCuCCACU----------ACGACCGC-----UACCGCUUa -5'
19133 5' -55.6 NC_004684.1 + 6409 0.66 0.708298
Target:  5'- cCGAGGUGuacaGCUcGGCGgcGGCGu-- -3'
miRNA:   3'- uGCUCCACua--CGA-CCGCuaCCGCuua -5'
19133 5' -55.6 NC_004684.1 + 11367 0.66 0.697522
Target:  5'- cGCGAGGU---GCcGGUGGUGGCGu-- -3'
miRNA:   3'- -UGCUCCAcuaCGaCCGCUACCGCuua -5'
19133 5' -55.6 NC_004684.1 + 66184 0.66 0.686682
Target:  5'- ---cGGUGGUGgUGGUGGUGGCc--- -3'
miRNA:   3'- ugcuCCACUACgACCGCUACCGcuua -5'
19133 5' -55.6 NC_004684.1 + 62094 0.67 0.67579
Target:  5'- cGCGucGUcGUaGCUGGCGcUGGCGAAc -3'
miRNA:   3'- -UGCucCAcUA-CGACCGCuACCGCUUa -5'
19133 5' -55.6 NC_004684.1 + 33292 0.67 0.67579
Target:  5'- aGC-AGGUGGUGCUcGCGcgGGUGGc- -3'
miRNA:   3'- -UGcUCCACUACGAcCGCuaCCGCUua -5'
19133 5' -55.6 NC_004684.1 + 19607 0.67 0.674698
Target:  5'- cCGAGGU---GCUGGCGGUgacgcucGGCGAc- -3'
miRNA:   3'- uGCUCCAcuaCGACCGCUA-------CCGCUua -5'
19133 5' -55.6 NC_004684.1 + 51044 0.67 0.664857
Target:  5'- uGCGGccaccgccGGUGAcgaUGCgcccgugGGUGAUGGCGAu- -3'
miRNA:   3'- -UGCU--------CCACU---ACGa------CCGCUACCGCUua -5'
19133 5' -55.6 NC_004684.1 + 51981 0.67 0.642909
Target:  5'- uCGGGGUcaacaAUGCUGGCcgccccGAUGGCGGc- -3'
miRNA:   3'- uGCUCCAc----UACGACCG------CUACCGCUua -5'
19133 5' -55.6 NC_004684.1 + 64935 0.68 0.609939
Target:  5'- gGCGGcGGUGAgcgccugGCgGGCGGUGGCc--- -3'
miRNA:   3'- -UGCU-CCACUa------CGaCCGCUACCGcuua -5'
19133 5' -55.6 NC_004684.1 + 38107 0.68 0.577139
Target:  5'- uCG-GGUcGGaGCUGGUGAUGGUGAGc -3'
miRNA:   3'- uGCuCCA-CUaCGACCGCUACCGCUUa -5'
19133 5' -55.6 NC_004684.1 + 63118 0.68 0.577139
Target:  5'- cACcAGGcccuUGCUGGCGAUGGUGGu- -3'
miRNA:   3'- -UGcUCCacu-ACGACCGCUACCGCUua -5'
19133 5' -55.6 NC_004684.1 + 27998 0.7 0.481966
Target:  5'- gGCGucuGGGUGAUGCaGGuCGAUGGCc--- -3'
miRNA:   3'- -UGC---UCCACUACGaCC-GCUACCGcuua -5'
19133 5' -55.6 NC_004684.1 + 65125 0.7 0.481966
Target:  5'- uCGAGGUccagGGUGUUGGUGggGGUGAc- -3'
miRNA:   3'- uGCUCCA----CUACGACCGCuaCCGCUua -5'
19133 5' -55.6 NC_004684.1 + 47691 0.7 0.461814
Target:  5'- uCGaAGGUGAUGCUGGU--UGGCGc-- -3'
miRNA:   3'- uGC-UCCACUACGACCGcuACCGCuua -5'
19133 5' -55.6 NC_004684.1 + 56711 0.7 0.451905
Target:  5'- -gGGGGUGAaGCUGGCGGUGcUGAu- -3'
miRNA:   3'- ugCUCCACUaCGACCGCUACcGCUua -5'
19133 5' -55.6 NC_004684.1 + 45462 0.71 0.413482
Target:  5'- cCGAGGuUGAUGCUcccGGCGGUGGUc--- -3'
miRNA:   3'- uGCUCC-ACUACGA---CCGCUACCGcuua -5'
19133 5' -55.6 NC_004684.1 + 22986 0.71 0.413482
Target:  5'- aACGAGGUGGccgugucgaUGCUGcGCGAguUGcGCGAGg -3'
miRNA:   3'- -UGCUCCACU---------ACGAC-CGCU--AC-CGCUUa -5'
19133 5' -55.6 NC_004684.1 + 16339 0.72 0.377138
Target:  5'- aGCGAGGaGcgGCUGGCGcUGGcCGAc- -3'
miRNA:   3'- -UGCUCCaCuaCGACCGCuACC-GCUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.