miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19134 3' -53.2 NC_004684.1 + 34718 0.66 0.883572
Target:  5'- cCGAGGCCGUagccaugccGCCGC-CAGGC-CUUGc -3'
miRNA:   3'- -GCUCUGGUA---------CGGCGaGUUUGuGGACc -5'
19134 3' -53.2 NC_004684.1 + 5690 0.66 0.883572
Target:  5'- cCGGGGCCcgGCCuGCcCAcGGCACCg-- -3'
miRNA:   3'- -GCUCUGGuaCGG-CGaGU-UUGUGGacc -5'
19134 3' -53.2 NC_004684.1 + 24902 0.66 0.883572
Target:  5'- aCGAGAUgGccGCCGCcgCGAucaGCGCgCUGGg -3'
miRNA:   3'- -GCUCUGgUa-CGGCGa-GUU---UGUG-GACC- -5'
19134 3' -53.2 NC_004684.1 + 7186 0.66 0.883572
Target:  5'- cCGAGGCCAacGCCGaUCAGcACAuCCUGc -3'
miRNA:   3'- -GCUCUGGUa-CGGCgAGUU-UGU-GGACc -5'
19134 3' -53.2 NC_004684.1 + 14547 0.66 0.883572
Target:  5'- aCGAuGACggCGUaCCGCU-GGACACCUGGu -3'
miRNA:   3'- -GCU-CUG--GUAcGGCGAgUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 15619 0.66 0.875983
Target:  5'- aCGAGuACCGcGagCGCgagcacgaCAAGCGCCUGGa -3'
miRNA:   3'- -GCUC-UGGUaCg-GCGa-------GUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 56662 0.66 0.875983
Target:  5'- --uGACCccGUgGCagAAACGCCUGGc -3'
miRNA:   3'- gcuCUGGuaCGgCGagUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 40936 0.66 0.875983
Target:  5'- uCGcGGCCAggcgUGCCGC-CGuACACCgGGc -3'
miRNA:   3'- -GCuCUGGU----ACGGCGaGUuUGUGGaCC- -5'
19134 3' -53.2 NC_004684.1 + 34216 0.66 0.875983
Target:  5'- uGAcGACCuUGCCGaggUCGAGgGCCUGc -3'
miRNA:   3'- gCU-CUGGuACGGCg--AGUUUgUGGACc -5'
19134 3' -53.2 NC_004684.1 + 26931 0.66 0.874435
Target:  5'- cCGAGACCcccgagcagcgGCCGCcUggGCACCg-- -3'
miRNA:   3'- -GCUCUGGua---------CGGCGaGuuUGUGGacc -5'
19134 3' -53.2 NC_004684.1 + 7281 0.66 0.868144
Target:  5'- gCGAGACCAguucaucGCCGCacu-GCACCa-- -3'
miRNA:   3'- -GCUCUGGUa------CGGCGaguuUGUGGacc -5'
19134 3' -53.2 NC_004684.1 + 17166 0.66 0.868144
Target:  5'- aCGAGuACC-UGCgCGUguucGGCACCUGGc -3'
miRNA:   3'- -GCUC-UGGuACG-GCGagu-UUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 65786 0.66 0.868144
Target:  5'- aGGuGCCGgaacUGCUGCUCcuGCACgCUGGc -3'
miRNA:   3'- gCUcUGGU----ACGGCGAGuuUGUG-GACC- -5'
19134 3' -53.2 NC_004684.1 + 44872 0.66 0.868144
Target:  5'- gCGAGGCC-UGCCuGCgUCA-GCugCUGa -3'
miRNA:   3'- -GCUCUGGuACGG-CG-AGUuUGugGACc -5'
19134 3' -53.2 NC_004684.1 + 19718 0.66 0.868144
Target:  5'- uGGGACg--GCCaCUCGgugagcgcGGCACCUGGa -3'
miRNA:   3'- gCUCUGguaCGGcGAGU--------UUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 31235 0.66 0.865745
Target:  5'- uGAcGCCAuUGCCGauguguucgacggcCUCcgGGACACCUGGa -3'
miRNA:   3'- gCUcUGGU-ACGGC--------------GAG--UUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 57166 0.66 0.860062
Target:  5'- gGuGGCCGacgcGCaCGCUCGGGCgcaggcggGCCUGGa -3'
miRNA:   3'- gCuCUGGUa---CG-GCGAGUUUG--------UGGACC- -5'
19134 3' -53.2 NC_004684.1 + 13994 0.66 0.860062
Target:  5'- gGAGcaguuGCCcgacgGCaCGCUCAu-CACCUGGa -3'
miRNA:   3'- gCUC-----UGGua---CG-GCGAGUuuGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 67124 0.66 0.860062
Target:  5'- --uGGCCAUGCgUGCgCAGGCugUUGGc -3'
miRNA:   3'- gcuCUGGUACG-GCGaGUUUGugGACC- -5'
19134 3' -53.2 NC_004684.1 + 20879 0.66 0.8551
Target:  5'- -aGGACCGUGCggCGCUgaucgcugagugggaCGAGUACCUGGa -3'
miRNA:   3'- gcUCUGGUACG--GCGA---------------GUUUGUGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.