Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19134 | 3' | -53.2 | NC_004684.1 | + | 56662 | 0.66 | 0.875983 |
Target: 5'- --uGACCccGUgGCagAAACGCCUGGc -3' miRNA: 3'- gcuCUGGuaCGgCGagUUUGUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 57166 | 0.66 | 0.860062 |
Target: 5'- gGuGGCCGacgcGCaCGCUCGGGCgcaggcggGCCUGGa -3' miRNA: 3'- gCuCUGGUa---CG-GCGAGUUUG--------UGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 31235 | 0.66 | 0.865745 |
Target: 5'- uGAcGCCAuUGCCGauguguucgacggcCUCcgGGACACCUGGa -3' miRNA: 3'- gCUcUGGU-ACGGC--------------GAG--UUUGUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 7281 | 0.66 | 0.868144 |
Target: 5'- gCGAGACCAguucaucGCCGCacu-GCACCa-- -3' miRNA: 3'- -GCUCUGGUa------CGGCGaguuUGUGGacc -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 19718 | 0.66 | 0.868144 |
Target: 5'- uGGGACg--GCCaCUCGgugagcgcGGCACCUGGa -3' miRNA: 3'- gCUCUGguaCGGcGAGU--------UUGUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 24902 | 0.66 | 0.883572 |
Target: 5'- aCGAGAUgGccGCCGCcgCGAucaGCGCgCUGGg -3' miRNA: 3'- -GCUCUGgUa-CGGCGa-GUU---UGUG-GACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 44872 | 0.66 | 0.868144 |
Target: 5'- gCGAGGCC-UGCCuGCgUCA-GCugCUGa -3' miRNA: 3'- -GCUCUGGuACGG-CG-AGUuUGugGACc -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 65786 | 0.66 | 0.868144 |
Target: 5'- aGGuGCCGgaacUGCUGCUCcuGCACgCUGGc -3' miRNA: 3'- gCUcUGGU----ACGGCGAGuuUGUG-GACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 27158 | 0.66 | 0.850053 |
Target: 5'- cCGAGACCGgcaaguggGCCGgguacguguucgUCAAGCuCCUGGu -3' miRNA: 3'- -GCUCUGGUa-------CGGCg-----------AGUUUGuGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 20879 | 0.66 | 0.8551 |
Target: 5'- -aGGACCGUGCggCGCUgaucgcugagugggaCGAGUACCUGGa -3' miRNA: 3'- gcUCUGGUACG--GCGA---------------GUUUGUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 41523 | 0.66 | 0.850053 |
Target: 5'- aCGAGGCCcugGCaccgcaGCUCAucucugccuucCACCUGGc -3' miRNA: 3'- -GCUCUGGua-CGg-----CGAGUuu---------GUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 17739 | 0.66 | 0.851744 |
Target: 5'- cCGAGuCCAcGCCGUggUCGGuGCuCCUGGa -3' miRNA: 3'- -GCUCuGGUaCGGCG--AGUU-UGuGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 34216 | 0.66 | 0.875983 |
Target: 5'- uGAcGACCuUGCCGaggUCGAGgGCCUGc -3' miRNA: 3'- gCU-CUGGuACGGCg--AGUUUgUGGACc -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 67124 | 0.66 | 0.860062 |
Target: 5'- --uGGCCAUGCgUGCgCAGGCugUUGGc -3' miRNA: 3'- gcuCUGGUACG-GCGaGUUUGugGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 13994 | 0.66 | 0.860062 |
Target: 5'- gGAGcaguuGCCcgacgGCaCGCUCAu-CACCUGGa -3' miRNA: 3'- gCUC-----UGGua---CG-GCGAGUuuGUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 14547 | 0.66 | 0.883572 |
Target: 5'- aCGAuGACggCGUaCCGCU-GGACACCUGGu -3' miRNA: 3'- -GCU-CUG--GUAcGGCGAgUUUGUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 48448 | 0.66 | 0.8509 |
Target: 5'- --uGGCCAUccugcGCCGCUacauggaCAAGgGCCUGGu -3' miRNA: 3'- gcuCUGGUA-----CGGCGA-------GUUUgUGGACC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 26931 | 0.66 | 0.874435 |
Target: 5'- cCGAGACCcccgagcagcgGCCGCcUggGCACCg-- -3' miRNA: 3'- -GCUCUGGua---------CGGCGaGuuUGUGGacc -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 40936 | 0.66 | 0.875983 |
Target: 5'- uCGcGGCCAggcgUGCCGC-CGuACACCgGGc -3' miRNA: 3'- -GCuCUGGU----ACGGCGaGUuUGUGGaCC- -5' |
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19134 | 3' | -53.2 | NC_004684.1 | + | 17166 | 0.66 | 0.868144 |
Target: 5'- aCGAGuACC-UGCgCGUguucGGCACCUGGc -3' miRNA: 3'- -GCUC-UGGuACG-GCGagu-UUGUGGACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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