miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19134 3' -53.2 NC_004684.1 + 205 0.69 0.736817
Target:  5'- gCGAGACCGUGacCCGCacgUCcGGCACCa-- -3'
miRNA:   3'- -GCUCUGGUAC--GGCG---AGuUUGUGGacc -5'
19134 3' -53.2 NC_004684.1 + 754 0.66 0.8509
Target:  5'- cCGAGGCCAUcguggccaccaagGCCGC--AGGCACCaagcUGGc -3'
miRNA:   3'- -GCUCUGGUA-------------CGGCGagUUUGUGG----ACC- -5'
19134 3' -53.2 NC_004684.1 + 1465 0.68 0.746197
Target:  5'- uCGAGACCggGCCGgaCGugcccggugcggcGGC-CCUGGu -3'
miRNA:   3'- -GCUCUGGuaCGGCgaGU-------------UUGuGGACC- -5'
19134 3' -53.2 NC_004684.1 + 1850 0.67 0.843198
Target:  5'- -cGGACCAacgccggGCCGCaUAucCACCUGGc -3'
miRNA:   3'- gcUCUGGUa------CGGCGaGUuuGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 2811 0.69 0.740997
Target:  5'- cCGAGGCCAaGaaGCUCcugcgcgggugggugGAugaGCACCUGGa -3'
miRNA:   3'- -GCUCUGGUaCggCGAG---------------UU---UGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 2912 0.7 0.672522
Target:  5'- aCGAGGCCAccaccgGCCuGCUCuacAACAUCUGc -3'
miRNA:   3'- -GCUCUGGUa-----CGG-CGAGu--UUGUGGACc -5'
19134 3' -53.2 NC_004684.1 + 3248 0.71 0.606845
Target:  5'- gGAGACCAcGCUGCUggccuggcCGGACAUCgUGGa -3'
miRNA:   3'- gCUCUGGUaCGGCGA--------GUUUGUGG-ACC- -5'
19134 3' -53.2 NC_004684.1 + 3271 0.68 0.777741
Target:  5'- aCGAGACCAUGCgcaccgaGUUCGAG-GCCaUGGc -3'
miRNA:   3'- -GCUCUGGUACGg------CGAGUUUgUGG-ACC- -5'
19134 3' -53.2 NC_004684.1 + 3355 0.71 0.603564
Target:  5'- uCGAGGCCGacaccGCCgacaccgaggucaaGCgcggCAAGCGCCUGGa -3'
miRNA:   3'- -GCUCUGGUa----CGG--------------CGa---GUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 4201 0.7 0.682311
Target:  5'- uGGGGCCGUucgGCCGCgUCGAgucgacccggcgcGCaACCUGGu -3'
miRNA:   3'- gCUCUGGUA---CGGCG-AGUU-------------UG-UGGACC- -5'
19134 3' -53.2 NC_004684.1 + 4843 0.7 0.683396
Target:  5'- -aAGGCCAaGCUGgaCGAGCugCUGGc -3'
miRNA:   3'- gcUCUGGUaCGGCgaGUUUGugGACC- -5'
19134 3' -53.2 NC_004684.1 + 4870 0.7 0.650671
Target:  5'- gGAGugguCCAUugaagGCgGCUCAGGCgGCCUGGu -3'
miRNA:   3'- gCUCu---GGUA-----CGgCGAGUUUG-UGGACC- -5'
19134 3' -53.2 NC_004684.1 + 4964 0.67 0.843198
Target:  5'- aCGAGGCCuucgGaCUGC----GCACCUGGg -3'
miRNA:   3'- -GCUCUGGua--C-GGCGaguuUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 5093 0.69 0.736817
Target:  5'- gGAGGCCcgcgcGgCGCUgGAgcaGCGCCUGGa -3'
miRNA:   3'- gCUCUGGua---CgGCGAgUU---UGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 5603 0.69 0.733672
Target:  5'- aCGGGGCCGagcUGgCGCgCAuggugcuggagcugGACGCCUGGu -3'
miRNA:   3'- -GCUCUGGU---ACgGCGaGU--------------UUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 5690 0.66 0.883572
Target:  5'- cCGGGGCCcgGCCuGCcCAcGGCACCg-- -3'
miRNA:   3'- -GCUCUGGuaCGG-CGaGU-UUGUGGacc -5'
19134 3' -53.2 NC_004684.1 + 7090 0.69 0.704988
Target:  5'- cCGAGGCCcuggagGCCGC-CGAGgACCgGGc -3'
miRNA:   3'- -GCUCUGGua----CGGCGaGUUUgUGGaCC- -5'
19134 3' -53.2 NC_004684.1 + 7104 1.11 0.001539
Target:  5'- uCGAGACCAUGCCGCUCAAACACCUGGa -3'
miRNA:   3'- -GCUCUGGUACGGCGAGUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 7186 0.66 0.883572
Target:  5'- cCGAGGCCAacGCCGaUCAGcACAuCCUGc -3'
miRNA:   3'- -GCUCUGGUa-CGGCgAGUU-UGU-GGACc -5'
19134 3' -53.2 NC_004684.1 + 7281 0.66 0.868144
Target:  5'- gCGAGACCAguucaucGCCGCacu-GCACCa-- -3'
miRNA:   3'- -GCUCUGGUa------CGGCGaguuUGUGGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.