miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19134 3' -53.2 NC_004684.1 + 37608 0.68 0.79735
Target:  5'- -cGGGCCcgGCCGCccaugcCGAACGCCgucGGu -3'
miRNA:   3'- gcUCUGGuaCGGCGa-----GUUUGUGGa--CC- -5'
19134 3' -53.2 NC_004684.1 + 64197 0.69 0.704988
Target:  5'- gCGuuGCCgguGUGCCGgaUcGACACCUGGg -3'
miRNA:   3'- -GCucUGG---UACGGCgaGuUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 12278 0.69 0.726297
Target:  5'- uCGAGGcCCGUGCUGCgCAGcGCGCCaacggUGGa -3'
miRNA:   3'- -GCUCU-GGUACGGCGaGUU-UGUGG-----ACC- -5'
19134 3' -53.2 NC_004684.1 + 2811 0.69 0.740997
Target:  5'- cCGAGGCCAaGaaGCUCcugcgcgggugggugGAugaGCACCUGGa -3'
miRNA:   3'- -GCUCUGGUaCggCGAG---------------UU---UGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 18360 0.68 0.747233
Target:  5'- gCGGcGCgGUGCCGCUCGAcauCACC-GGc -3'
miRNA:   3'- -GCUcUGgUACGGCGAGUUu--GUGGaCC- -5'
19134 3' -53.2 NC_004684.1 + 47868 0.68 0.757533
Target:  5'- gGAGGCgGUGCCGgU-GAGCGUCUGGa -3'
miRNA:   3'- gCUCUGgUACGGCgAgUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 56902 0.68 0.757533
Target:  5'- gGAGGCCAagGCCGCcaUCGugUccuccuGCCUGGa -3'
miRNA:   3'- gCUCUGGUa-CGGCG--AGUuuG------UGGACC- -5'
19134 3' -53.2 NC_004684.1 + 39967 0.68 0.757533
Target:  5'- gGAGcGCCAuccccUG-CGCUcCGGGCACCUGGu -3'
miRNA:   3'- gCUC-UGGU-----ACgGCGA-GUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 42863 0.68 0.777741
Target:  5'- uGGGGCCAaccagGCCGC-CGcACGCCcGGc -3'
miRNA:   3'- gCUCUGGUa----CGGCGaGUuUGUGGaCC- -5'
19134 3' -53.2 NC_004684.1 + 9133 0.7 0.683396
Target:  5'- cCGAGGCCAUGgucaagaUGCUCG---GCCUGGc -3'
miRNA:   3'- -GCUCUGGUACg------GCGAGUuugUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 56429 0.7 0.66161
Target:  5'- uCGGGGuCCAaggagGCCGCcaccacgauccUCAAAgGCCUGGa -3'
miRNA:   3'- -GCUCU-GGUa----CGGCG-----------AGUUUgUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 4870 0.7 0.650671
Target:  5'- gGAGugguCCAUugaagGCgGCUCAGGCgGCCUGGu -3'
miRNA:   3'- gCUCu---GGUA-----CGgCGAGUUUG-UGGACC- -5'
19134 3' -53.2 NC_004684.1 + 21045 0.77 0.309684
Target:  5'- aCGAGACCcgugcacggGUGCCgguGCUgacCGGGCACCUGGg -3'
miRNA:   3'- -GCUCUGG---------UACGG---CGA---GUUUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 32646 0.76 0.341326
Target:  5'- cCGAGAUCGUGCCGgUUGgcAAgGCCUGGc -3'
miRNA:   3'- -GCUCUGGUACGGCgAGU--UUgUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 34547 0.75 0.36655
Target:  5'- uCGAGGCCAUgGCCaGCUacgaGAGCGCgCUGGc -3'
miRNA:   3'- -GCUCUGGUA-CGG-CGAg---UUUGUG-GACC- -5'
19134 3' -53.2 NC_004684.1 + 63133 0.73 0.479449
Target:  5'- aGAGGCCAUuCCGC-CGGGCACC-GGc -3'
miRNA:   3'- gCUCUGGUAcGGCGaGUUUGUGGaCC- -5'
19134 3' -53.2 NC_004684.1 + 15163 0.72 0.53129
Target:  5'- --uGGCCGccGCCGC-CAcGCACCUGGg -3'
miRNA:   3'- gcuCUGGUa-CGGCGaGUuUGUGGACC- -5'
19134 3' -53.2 NC_004684.1 + 58175 0.71 0.574167
Target:  5'- --cGACUGUGCCGC-CAccAGCACCUGc -3'
miRNA:   3'- gcuCUGGUACGGCGaGU--UUGUGGACc -5'
19134 3' -53.2 NC_004684.1 + 3248 0.71 0.606845
Target:  5'- gGAGACCAcGCUGCUggccuggcCGGACAUCgUGGa -3'
miRNA:   3'- gCUCUGGUaCGGCGA--------GUUUGUGG-ACC- -5'
19134 3' -53.2 NC_004684.1 + 62892 0.7 0.650671
Target:  5'- --cGGCCAUGCCGUUgccacggcgggcCAGGC-CCUGGc -3'
miRNA:   3'- gcuCUGGUACGGCGA------------GUUUGuGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.