miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19134 5' -57.5 NC_004684.1 + 59843 0.66 0.666449
Target:  5'- cCCGGGGccGGUCCAGC----ACCGCg -3'
miRNA:   3'- uGGUUCCa-CCAGGUCGucacUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 55281 0.66 0.666449
Target:  5'- aGCCGGGGUcGGggguuGCGuGaUGGCCGCCg -3'
miRNA:   3'- -UGGUUCCA-CCaggu-CGU-C-ACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 11642 0.66 0.666449
Target:  5'- gACCGucGGcaucGGccacgCCAGCAcggcggccaacGUGACCGCCg -3'
miRNA:   3'- -UGGUu-CCa---CCa----GGUCGU-----------CACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 32926 0.66 0.655759
Target:  5'- uGCCGgaccGGGUGccUCgGGCAGgaugGGCCGCUc -3'
miRNA:   3'- -UGGU----UCCACc-AGgUCGUCa---CUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 8547 0.66 0.655759
Target:  5'- -aCGAGGUGGaCCuguGCGccGACCGCa -3'
miRNA:   3'- ugGUUCCACCaGGu--CGUcaCUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 16374 0.66 0.655759
Target:  5'- uGCC--GGUGGaCCAGCAG-GGCaGCUa -3'
miRNA:   3'- -UGGuuCCACCaGGUCGUCaCUGgCGG- -5'
19134 5' -57.5 NC_004684.1 + 63573 0.66 0.655759
Target:  5'- cGCCGAacgcGcCCAGCAGauccuUGACCGCCa -3'
miRNA:   3'- -UGGUUccacCaGGUCGUC-----ACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 45079 0.66 0.645049
Target:  5'- gGCCAcGGGgagcaucggGGUUCGGCAcc-GCCGCCg -3'
miRNA:   3'- -UGGU-UCCa--------CCAGGUCGUcacUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 10227 0.66 0.645049
Target:  5'- uGCCcAGGUGcG-CgAGCAGcUGGCCGUg -3'
miRNA:   3'- -UGGuUCCAC-CaGgUCGUC-ACUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 2038 0.66 0.645049
Target:  5'- cGCCcuGGUGGcCCuG-GG-GGCCGCCa -3'
miRNA:   3'- -UGGuuCCACCaGGuCgUCaCUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 49764 0.66 0.645049
Target:  5'- cACCAgcgcGGGUGaucuccUCCAGCAGUG-CCGg- -3'
miRNA:   3'- -UGGU----UCCACc-----AGGUCGUCACuGGCgg -5'
19134 5' -57.5 NC_004684.1 + 7490 0.66 0.645049
Target:  5'- gGCCuggcuGGUuGUCUAcGCGcUGGCCGCCg -3'
miRNA:   3'- -UGGuu---CCAcCAGGU-CGUcACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 5530 0.66 0.634327
Target:  5'- uCCGAcGaGUGGUCCcgccaGGCuGUGACCcuuGCCc -3'
miRNA:   3'- uGGUU-C-CACCAGG-----UCGuCACUGG---CGG- -5'
19134 5' -57.5 NC_004684.1 + 36948 0.66 0.634327
Target:  5'- -aCGAGG-GGUCgguCAGCAGcuccacGCCGCCg -3'
miRNA:   3'- ugGUUCCaCCAG---GUCGUCac----UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 12229 0.66 0.634327
Target:  5'- cCgGGGGUGcuUCCGGCAGcgGcuccACCGCCa -3'
miRNA:   3'- uGgUUCCACc-AGGUCGUCa-C----UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 63899 0.66 0.63111
Target:  5'- uGCC-AGGUGGUCCagguaccggguaacGGCGuUGuACgCGCCg -3'
miRNA:   3'- -UGGuUCCACCAGG--------------UCGUcAC-UG-GCGG- -5'
19134 5' -57.5 NC_004684.1 + 35048 0.66 0.623603
Target:  5'- -aCuGGGU-GUCCAGC-GUGAUCGUCg -3'
miRNA:   3'- ugGuUCCAcCAGGUCGuCACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 61461 0.66 0.623603
Target:  5'- gACCGcccGGUGG-CCAGCGc-GGCCaGCCg -3'
miRNA:   3'- -UGGUu--CCACCaGGUCGUcaCUGG-CGG- -5'
19134 5' -57.5 NC_004684.1 + 40469 0.66 0.623603
Target:  5'- uGCUcGGG-GGUCuCGGCGGUcugcgccgaGugCGCCa -3'
miRNA:   3'- -UGGuUCCaCCAG-GUCGUCA---------CugGCGG- -5'
19134 5' -57.5 NC_004684.1 + 28996 0.66 0.623603
Target:  5'- gACC-GGGaGGcCUAGCuGUGAUCGUCa -3'
miRNA:   3'- -UGGuUCCaCCaGGUCGuCACUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.