miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19134 5' -57.5 NC_004684.1 + 374 0.7 0.384542
Target:  5'- gGCCAucGUGGUgCCGGuCAGgaucACCGCCg -3'
miRNA:   3'- -UGGUucCACCA-GGUC-GUCac--UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 644 0.68 0.538769
Target:  5'- cGCCGGGGUGcuGUaCCGGguGgugcgcaaGACCGUCa -3'
miRNA:   3'- -UGGUUCCAC--CA-GGUCguCa-------CUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 1535 0.74 0.249646
Target:  5'- uCCGAGGUGGccaCCAGCGGcccccacaACCGCCu -3'
miRNA:   3'- uGGUUCCACCa--GGUCGUCac------UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 1930 0.7 0.393316
Target:  5'- uGCCGGGccUGGUaCCGGCgcacGGUGGCCGCg -3'
miRNA:   3'- -UGGUUCc-ACCA-GGUCG----UCACUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 2010 0.7 0.420403
Target:  5'- cGCCuGGGUgggGGUCC-GCGaUGACCGUCg -3'
miRNA:   3'- -UGGuUCCA---CCAGGuCGUcACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 2038 0.66 0.645049
Target:  5'- cGCCcuGGUGGcCCuG-GG-GGCCGCCa -3'
miRNA:   3'- -UGGuuCCACCaGGuCgUCaCUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 2210 0.7 0.429679
Target:  5'- cGCCGAGGacaacaUGGUCCAGaccguGGUGcccaACCGCa -3'
miRNA:   3'- -UGGUUCC------ACCAGGUCg----UCAC----UGGCGg -5'
19134 5' -57.5 NC_004684.1 + 3030 0.68 0.532538
Target:  5'- cACCGAGG-GG-CCgcacaacgaggcccgGGUGGUGGCgCGCCg -3'
miRNA:   3'- -UGGUUCCaCCaGG---------------UCGUCACUG-GCGG- -5'
19134 5' -57.5 NC_004684.1 + 4387 0.72 0.334688
Target:  5'- gGCCGAGcUGGUcuaucgcgCCAGCAaguccUGGCCGCCg -3'
miRNA:   3'- -UGGUUCcACCA--------GGUCGUc----ACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 5530 0.66 0.634327
Target:  5'- uCCGAcGaGUGGUCCcgccaGGCuGUGACCcuuGCCc -3'
miRNA:   3'- uGGUU-C-CACCAGG-----UCGuCACUGG---CGG- -5'
19134 5' -57.5 NC_004684.1 + 6073 0.71 0.367388
Target:  5'- cGCCGAGGgcggcGGcCCGGCGGcgGuGCUGCCg -3'
miRNA:   3'- -UGGUUCCa----CCaGGUCGUCa-C-UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 7138 1.12 0.000471
Target:  5'- gACCAAGGUGGUCCAGCAGUGACCGCCa -3'
miRNA:   3'- -UGGUUCCACCAGGUCGUCACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 7302 0.72 0.319154
Target:  5'- uUCGGGGUGGcCCGGUgaAGgcccgcacgGGCCGCCg -3'
miRNA:   3'- uGGUUCCACCaGGUCG--UCa--------CUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 7490 0.66 0.645049
Target:  5'- gGCCuggcuGGUuGUCUAcGCGcUGGCCGCCg -3'
miRNA:   3'- -UGGuu---CCAcCAGGU-CGUcACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 7513 0.72 0.304168
Target:  5'- cAUCGGGGUGGaccugcCCGGCAccgaccUGGCCGCCg -3'
miRNA:   3'- -UGGUUCCACCa-----GGUCGUc-----ACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 7920 0.66 0.6161
Target:  5'- gGCCGcgcAGGUGGUggacaucgccgccgaCCGGCgcacaccGGUGggcaagGCCGCCa -3'
miRNA:   3'- -UGGU---UCCACCA---------------GGUCG-------UCAC------UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 8205 0.73 0.255994
Target:  5'- gAUCAAGcgcGUGGUCgAGCAGcUGACCGUa -3'
miRNA:   3'- -UGGUUC---CACCAGgUCGUC-ACUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 8547 0.66 0.655759
Target:  5'- -aCGAGGUGGaCCuguGCGccGACCGCa -3'
miRNA:   3'- ugGUUCCACCaGGu--CGUcaCUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 9901 0.69 0.467945
Target:  5'- cGCCGAcGaGUGGUCCgggcugaccgaGGCGGUGAUUgugGCCg -3'
miRNA:   3'- -UGGUU-C-CACCAGG-----------UCGUCACUGG---CGG- -5'
19134 5' -57.5 NC_004684.1 + 10158 0.71 0.364861
Target:  5'- cGCCcAGGUGGggcguuugUCCGGCAGgcugagcaccaucgcGCCGCCg -3'
miRNA:   3'- -UGGuUCCACC--------AGGUCGUCac-------------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.