miRNA display CGI


Results 1 - 20 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19134 5' -57.5 NC_004684.1 + 57901 0.71 0.35901
Target:  5'- gGCCGggcugaAGGUGGcCgGGC--UGACCGCCg -3'
miRNA:   3'- -UGGU------UCCACCaGgUCGucACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 8205 0.73 0.255994
Target:  5'- gAUCAAGcgcGUGGUCgAGCAGcUGACCGUa -3'
miRNA:   3'- -UGGUUC---CACCAGgUCGUC-ACUGGCGg -5'
19134 5' -57.5 NC_004684.1 + 13253 0.73 0.262473
Target:  5'- gGCCAGGccGUGaccgCCAGCgcgcuGGUGGCCGCCg -3'
miRNA:   3'- -UGGUUC--CACca--GGUCG-----UCACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 28056 0.73 0.268419
Target:  5'- uGCC--GGUGGUcggccCCGGCGGUGuggccggGCCGCCg -3'
miRNA:   3'- -UGGuuCCACCA-----GGUCGUCAC-------UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 55872 0.72 0.304168
Target:  5'- cGCCAAGGUGG-CCggGGCAugGACCuGCCc -3'
miRNA:   3'- -UGGUUCCACCaGG--UCGUcaCUGG-CGG- -5'
19134 5' -57.5 NC_004684.1 + 54221 0.72 0.326853
Target:  5'- gGCCGAGGUcGG-CCAGCAGcUGuuccagggcACCGCg -3'
miRNA:   3'- -UGGUUCCA-CCaGGUCGUC-AC---------UGGCGg -5'
19134 5' -57.5 NC_004684.1 + 4387 0.72 0.334688
Target:  5'- gGCCGAGcUGGUcuaucgcgCCAGCAaguccUGGCCGCCg -3'
miRNA:   3'- -UGGUUCcACCA--------GGUCGUc----ACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 52838 0.72 0.334688
Target:  5'- cACC-AGGU-GUCCAGCGGUacGCCGUCa -3'
miRNA:   3'- -UGGuUCCAcCAGGUCGUCAc-UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 24156 0.71 0.350767
Target:  5'- cGCUccGGUgcagGGUCCgcaGGCGGUG-CCGCCg -3'
miRNA:   3'- -UGGuuCCA----CCAGG---UCGUCACuGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 47103 0.74 0.249646
Target:  5'- uGCCGggacgcGGG-GGUCCGGCAGagcGugCGCCu -3'
miRNA:   3'- -UGGU------UCCaCCAGGUCGUCa--CugGCGG- -5'
19134 5' -57.5 NC_004684.1 + 1535 0.74 0.249646
Target:  5'- uCCGAGGUGGccaCCAGCGGcccccacaACCGCCu -3'
miRNA:   3'- uGGUUCCACCa--GGUCGUCac------UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 65948 0.74 0.249646
Target:  5'- gACC-AGGUGGUCCAGCucGGccugGACCuugGCCc -3'
miRNA:   3'- -UGGuUCCACCAGGUCG--UCa---CUGG---CGG- -5'
19134 5' -57.5 NC_004684.1 + 63333 0.81 0.078725
Target:  5'- aACCGggAGGUGGUCUcccCGGUGACCGCCc -3'
miRNA:   3'- -UGGU--UCCACCAGGuc-GUCACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 15859 0.79 0.106845
Target:  5'- cGCCGAGGUcaUCgAGCAcGUGGCCGCCa -3'
miRNA:   3'- -UGGUUCCAccAGgUCGU-CACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 41427 0.78 0.11924
Target:  5'- cCCGuggcGGUGGUgCGGCGGUG-CCGCCg -3'
miRNA:   3'- uGGUu---CCACCAgGUCGUCACuGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 57816 0.78 0.132963
Target:  5'- gACCAcGGccUGGUcCCGGCGGUGcugGCCGCCg -3'
miRNA:   3'- -UGGUuCC--ACCA-GGUCGUCAC---UGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 21314 0.77 0.152159
Target:  5'- gGCgAGgcGGUGGUCCGGCGc-GACCGCCg -3'
miRNA:   3'- -UGgUU--CCACCAGGUCGUcaCUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 64926 0.75 0.20345
Target:  5'- gACCcAGGUGG--CGGCGGUGAgCGCCu -3'
miRNA:   3'- -UGGuUCCACCagGUCGUCACUgGCGG- -5'
19134 5' -57.5 NC_004684.1 + 65042 0.74 0.219838
Target:  5'- gGCUGAGGUcGUcCCAGgAGaUGACCGCCg -3'
miRNA:   3'- -UGGUUCCAcCA-GGUCgUC-ACUGGCGG- -5'
19134 5' -57.5 NC_004684.1 + 11143 0.74 0.249018
Target:  5'- -aCAAGGUGGUCgcgccguCGGUGGaccUGGCCGCCa -3'
miRNA:   3'- ugGUUCCACCAG-------GUCGUC---ACUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.