miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19137 3' -59.3 NC_004684.1 + 28567 0.66 0.517693
Target:  5'- cACCAgGCCGUC--GGgCACCGCCa- -3'
miRNA:   3'- uUGGUgCGGUAGgaCUgGUGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 22138 0.66 0.517693
Target:  5'- gGGCCGCGaCCAgCgCUGGCUGCCggGCCUg -3'
miRNA:   3'- -UUGGUGC-GGUaG-GACUGGUGG--CGGAa -5'
19137 3' -59.3 NC_004684.1 + 45839 0.66 0.517693
Target:  5'- cGGCCACGuCCuugaCCUcuuccACCACCGCCa- -3'
miRNA:   3'- -UUGGUGC-GGua--GGAc----UGGUGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 11927 0.66 0.517693
Target:  5'- cAGCCAgGgCCGUCCgcUGGCCAuggUCGCCa- -3'
miRNA:   3'- -UUGGUgC-GGUAGG--ACUGGU---GGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 38439 0.66 0.517693
Target:  5'- uGACCACGuCCAagguugCCgacggcgcGAUCACCGCCg- -3'
miRNA:   3'- -UUGGUGC-GGUa-----GGa-------CUGGUGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 39870 0.66 0.517693
Target:  5'- cGGCUGCGCaCGUCCUuGCCAgccucuggcCCGCCg- -3'
miRNA:   3'- -UUGGUGCG-GUAGGAcUGGU---------GGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 20798 0.66 0.517693
Target:  5'- aAACCGcCGCCGUC---GCCGCCGUCg- -3'
miRNA:   3'- -UUGGU-GCGGUAGgacUGGUGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 42073 0.66 0.507403
Target:  5'- cGCCAuacgcCGCCAgggCCgacgaaccGCCGCCGCCUg -3'
miRNA:   3'- uUGGU-----GCGGUa--GGac------UGGUGGCGGAa -5'
19137 3' -59.3 NC_004684.1 + 51334 0.66 0.507403
Target:  5'- gGGCCACGCUugCUUGGCCACgaugucgucguCGCCg- -3'
miRNA:   3'- -UUGGUGCGGuaGGACUGGUG-----------GCGGaa -5'
19137 3' -59.3 NC_004684.1 + 41731 0.66 0.507403
Target:  5'- -gUCGCGCCcugCCcgGuACCGCCGCCg- -3'
miRNA:   3'- uuGGUGCGGua-GGa-C-UGGUGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 14531 0.66 0.507403
Target:  5'- -cCCugGCCuaaCUGGCCgACCGCUa- -3'
miRNA:   3'- uuGGugCGGuagGACUGG-UGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 7306 0.66 0.507403
Target:  5'- cACCACGCgAaCCcGGCCAUgGCCg- -3'
miRNA:   3'- uUGGUGCGgUaGGaCUGGUGgCGGaa -5'
19137 3' -59.3 NC_004684.1 + 55546 0.66 0.507403
Target:  5'- gAACuCGCGCCG--CUGGCCGCCGUg-- -3'
miRNA:   3'- -UUG-GUGCGGUagGACUGGUGGCGgaa -5'
19137 3' -59.3 NC_004684.1 + 26314 0.66 0.497201
Target:  5'- cGGCCAgGCCG-CCgGGCCGCCgauuGCCg- -3'
miRNA:   3'- -UUGGUgCGGUaGGaCUGGUGG----CGGaa -5'
19137 3' -59.3 NC_004684.1 + 22818 0.66 0.497201
Target:  5'- uGGCCACuaCGUCCUgccugacccGAUCACCgGCCUg -3'
miRNA:   3'- -UUGGUGcgGUAGGA---------CUGGUGG-CGGAa -5'
19137 3' -59.3 NC_004684.1 + 31577 0.66 0.497201
Target:  5'- uGGCgGCGUCGUgaaUGACCACCGUCg- -3'
miRNA:   3'- -UUGgUGCGGUAgg-ACUGGUGGCGGaa -5'
19137 3' -59.3 NC_004684.1 + 35275 0.66 0.497201
Target:  5'- gGGCuCACGUCcUCCggugugGAcuCCACCGCCUg -3'
miRNA:   3'- -UUG-GUGCGGuAGGa-----CU--GGUGGCGGAa -5'
19137 3' -59.3 NC_004684.1 + 56024 0.66 0.496186
Target:  5'- cACCACGCUg--CUGGCCACCaccguggGCCUg -3'
miRNA:   3'- uUGGUGCGGuagGACUGGUGG-------CGGAa -5'
19137 3' -59.3 NC_004684.1 + 17526 0.66 0.493145
Target:  5'- uGCCACGCCGgacgacguggucgCCU-ACCaggACCGCCUg -3'
miRNA:   3'- uUGGUGCGGUa------------GGAcUGG---UGGCGGAa -5'
19137 3' -59.3 NC_004684.1 + 25803 0.66 0.487092
Target:  5'- cGACCuGCGCCAggaaaUG-CCGCCGCCg- -3'
miRNA:   3'- -UUGG-UGCGGUagg--ACuGGUGGCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.