miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19137 5' -53.5 NC_004684.1 + 31187 0.66 0.845003
Target:  5'- cGGGc-AAGGCCUCgUAGAGG-GcCUGGAa -3'
miRNA:   3'- -CCUucUUCCGGAG-GUCUUCaC-GACCU- -5'
19137 5' -53.5 NC_004684.1 + 14707 0.66 0.844134
Target:  5'- cGAGGAccuGGCCaaCCgggucaaAGAGGUGCUGGc -3'
miRNA:   3'- cCUUCUu--CCGGa-GG-------UCUUCACGACCu -5'
19137 5' -53.5 NC_004684.1 + 26244 0.67 0.798979
Target:  5'- uGGAGucGGCCaUCCAGgcGgGcCUGGAa -3'
miRNA:   3'- cCUUCuuCCGG-AGGUCuuCaC-GACCU- -5'
19137 5' -53.5 NC_004684.1 + 53165 0.67 0.797038
Target:  5'- cGGcguGAAGGCCUCCGGGgacAGgccgaccgcgccGCUGGc -3'
miRNA:   3'- -CCuu-CUUCCGGAGGUCU---UCa-----------CGACCu -5'
19137 5' -53.5 NC_004684.1 + 11347 0.68 0.758938
Target:  5'- uGAcGgcGGCCUCCAGGcccacGGUGgUGGc -3'
miRNA:   3'- cCUuCuuCCGGAGGUCU-----UCACgACCu -5'
19137 5' -53.5 NC_004684.1 + 63784 0.68 0.748572
Target:  5'- aGGguGAAGGCCuuggccuucgugUCCGcGAccguGGUGCUGGu -3'
miRNA:   3'- -CCuuCUUCCGG------------AGGU-CU----UCACGACCu -5'
19137 5' -53.5 NC_004684.1 + 65970 0.68 0.716806
Target:  5'- uGGAccuuggcccGGcAGGCCUCCAGGuc-GCUGGc -3'
miRNA:   3'- -CCU---------UCuUCCGGAGGUCUucaCGACCu -5'
19137 5' -53.5 NC_004684.1 + 9337 0.69 0.64799
Target:  5'- gGGAcgAGGAGGCCUCCGgugcgucccggcgcGAGGaGCcGGAc -3'
miRNA:   3'- -CCU--UCUUCCGGAGGU--------------CUUCaCGaCCU- -5'
19137 5' -53.5 NC_004684.1 + 22666 0.71 0.58513
Target:  5'- uGGAGAAGGCCg-CAGAAGcGCUcaaGGAc -3'
miRNA:   3'- cCUUCUUCCGGagGUCUUCaCGA---CCU- -5'
19137 5' -53.5 NC_004684.1 + 41254 0.74 0.391751
Target:  5'- ---uGAAGGCCUCCAGcuGGUGUggUGGGg -3'
miRNA:   3'- ccuuCUUCCGGAGGUCu-UCACG--ACCU- -5'
19137 5' -53.5 NC_004684.1 + 55657 0.77 0.285692
Target:  5'- uGGAGGAGGGCCUggcggcgcaCCAGc--UGCUGGAc -3'
miRNA:   3'- -CCUUCUUCCGGA---------GGUCuucACGACCU- -5'
19137 5' -53.5 NC_004684.1 + 15518 0.77 0.251377
Target:  5'- cGAGGccGAGGCCU-UGGAGGUGCUGGAg -3'
miRNA:   3'- cCUUC--UUCCGGAgGUCUUCACGACCU- -5'
19137 5' -53.5 NC_004684.1 + 10448 1.11 0.001222
Target:  5'- aGGAAGAAGGCCUCCAGAAGUGCUGGAu -3'
miRNA:   3'- -CCUUCUUCCGGAGGUCUUCACGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.