miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19140 3' -51.6 NC_004684.1 + 33670 0.66 0.940753
Target:  5'- uGGC--GUCGcUGUGCACCaccaCCGCg -3'
miRNA:   3'- gCUGaaCAGCuACGCGUGGaaa-GGCG- -5'
19140 3' -51.6 NC_004684.1 + 40772 0.66 0.940753
Target:  5'- cCGACggUGUCGuugGCGaugaCGCCg--CCGCc -3'
miRNA:   3'- -GCUGa-ACAGCua-CGC----GUGGaaaGGCG- -5'
19140 3' -51.6 NC_004684.1 + 61659 0.66 0.935581
Target:  5'- uCGGCgaaGUagcaGGUGUGCGCCUgcaCGCc -3'
miRNA:   3'- -GCUGaa-CAg---CUACGCGUGGAaagGCG- -5'
19140 3' -51.6 NC_004684.1 + 4223 0.66 0.935581
Target:  5'- aCGACUgcaugcgccUG-CGcgGCGCGCaggagCCGCa -3'
miRNA:   3'- -GCUGA---------ACaGCuaCGCGUGgaaa-GGCG- -5'
19140 3' -51.6 NC_004684.1 + 57829 0.66 0.935581
Target:  5'- uCGGCcacgUGuUCGcgGCGCACCggcUCCa- -3'
miRNA:   3'- -GCUGa---AC-AGCuaCGCGUGGaa-AGGcg -5'
19140 3' -51.6 NC_004684.1 + 49031 0.66 0.935581
Target:  5'- uGA--UGUCGA-GCgGCACCgcgCCGCc -3'
miRNA:   3'- gCUgaACAGCUaCG-CGUGGaaaGGCG- -5'
19140 3' -51.6 NC_004684.1 + 25595 0.66 0.935581
Target:  5'- aCGAagaacGUCGgcGUcgGCACCUggCCGCg -3'
miRNA:   3'- -GCUgaa--CAGCuaCG--CGUGGAaaGGCG- -5'
19140 3' -51.6 NC_004684.1 + 46930 0.66 0.930131
Target:  5'- -cGCUUGggGGUGCGCAgcaUCUUcgCCGCc -3'
miRNA:   3'- gcUGAACagCUACGCGU---GGAAa-GGCG- -5'
19140 3' -51.6 NC_004684.1 + 48970 0.66 0.930131
Target:  5'- uCGGCc-GcCGGUGCGCccGCCgggCCGCc -3'
miRNA:   3'- -GCUGaaCaGCUACGCG--UGGaaaGGCG- -5'
19140 3' -51.6 NC_004684.1 + 51620 0.66 0.924402
Target:  5'- --cCUUGgccgCGcucgGCGCACCUUUCgGUg -3'
miRNA:   3'- gcuGAACa---GCua--CGCGUGGAAAGgCG- -5'
19140 3' -51.6 NC_004684.1 + 7328 0.66 0.924402
Target:  5'- cCGACgcgUGcUCGGUGUGCaacccGCCggUgCGCg -3'
miRNA:   3'- -GCUGa--AC-AGCUACGCG-----UGGaaAgGCG- -5'
19140 3' -51.6 NC_004684.1 + 54469 0.66 0.924402
Target:  5'- gCGGCgaaGUUGGccgacgGCGCACCggcaCCGCu -3'
miRNA:   3'- -GCUGaa-CAGCUa-----CGCGUGGaaa-GGCG- -5'
19140 3' -51.6 NC_004684.1 + 31618 0.66 0.924402
Target:  5'- aCGAUggagCGcgGCGCGCgCUgggUCUGCa -3'
miRNA:   3'- -GCUGaacaGCuaCGCGUG-GAa--AGGCG- -5'
19140 3' -51.6 NC_004684.1 + 22493 0.66 0.918394
Target:  5'- cCGACgccaaCGGUGC-CACCUggUUCCGUc -3'
miRNA:   3'- -GCUGaaca-GCUACGcGUGGA--AAGGCG- -5'
19140 3' -51.6 NC_004684.1 + 32427 0.66 0.918394
Target:  5'- gGGCgUGUCGuUGCGCcaguCCag-CCGCu -3'
miRNA:   3'- gCUGaACAGCuACGCGu---GGaaaGGCG- -5'
19140 3' -51.6 NC_004684.1 + 5696 0.67 0.912108
Target:  5'- uGACgccgGUgGAgcaGCGCGCCcucgcgCCGCa -3'
miRNA:   3'- gCUGaa--CAgCUa--CGCGUGGaaa---GGCG- -5'
19140 3' -51.6 NC_004684.1 + 62579 0.67 0.912108
Target:  5'- cCGAgCUUGuccUCGAucUGCGCGCCggUCaugGCg -3'
miRNA:   3'- -GCU-GAAC---AGCU--ACGCGUGGaaAGg--CG- -5'
19140 3' -51.6 NC_004684.1 + 61505 0.67 0.905545
Target:  5'- gCGGCgc-UCGAUGCGCGCCa----GCa -3'
miRNA:   3'- -GCUGaacAGCUACGCGUGGaaaggCG- -5'
19140 3' -51.6 NC_004684.1 + 49538 0.67 0.905545
Target:  5'- gCGGCgugcgGUCGGUGaCGCacACCUUgCCaGCg -3'
miRNA:   3'- -GCUGaa---CAGCUAC-GCG--UGGAAaGG-CG- -5'
19140 3' -51.6 NC_004684.1 + 50303 0.67 0.898709
Target:  5'- gCGACUUcacgcgugcccaGUCGGUGCGC-CCgg-CCagGCg -3'
miRNA:   3'- -GCUGAA------------CAGCUACGCGuGGaaaGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.