miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19142 3' -58.9 NC_004684.1 + 40353 0.66 0.587535
Target:  5'- cGCUGGcggCGGC-CUugGCcuUGGgGGCCu -3'
miRNA:   3'- -CGACUa--GCCGuGGugCG--ACCaCCGGu -5'
19142 3' -58.9 NC_004684.1 + 25231 0.66 0.587535
Target:  5'- cGCUGGacgCGaacaaCACCGCGCUGGUgaaGGCg- -3'
miRNA:   3'- -CGACUa--GCc----GUGGUGCGACCA---CCGgu -5'
19142 3' -58.9 NC_004684.1 + 17752 0.66 0.587535
Target:  5'- -gUGGUCGGUgcuccuggaGCCGCuggGCUGGacaccGGCCAg -3'
miRNA:   3'- cgACUAGCCG---------UGGUG---CGACCa----CCGGU- -5'
19142 3' -58.9 NC_004684.1 + 43700 0.66 0.587535
Target:  5'- --aGGUUGGagGCCACGCucUGGUccgGGCCGa -3'
miRNA:   3'- cgaCUAGCCg-UGGUGCG--ACCA---CCGGU- -5'
19142 3' -58.9 NC_004684.1 + 25190 0.66 0.587535
Target:  5'- cCUGGUUGGCcagGCgCugGCaccgGGUGGCUu -3'
miRNA:   3'- cGACUAGCCG---UG-GugCGa---CCACCGGu -5'
19142 3' -58.9 NC_004684.1 + 18711 0.66 0.587535
Target:  5'- cGCUGAccggUGGCACgCucuCGCUGGaugUGGCg- -3'
miRNA:   3'- -CGACUa---GCCGUG-Gu--GCGACC---ACCGgu -5'
19142 3' -58.9 NC_004684.1 + 39979 0.66 0.587535
Target:  5'- cCUGcgCuccgGGCACCugGUcggugUGGUGGCUu -3'
miRNA:   3'- cGACuaG----CCGUGGugCG-----ACCACCGGu -5'
19142 3' -58.9 NC_004684.1 + 7483 0.66 0.576972
Target:  5'- cGCUGAcaagggccgguUCGuGCGCCGcCGCaucggGGUGGaCCu -3'
miRNA:   3'- -CGACU-----------AGC-CGUGGU-GCGa----CCACC-GGu -5'
19142 3' -58.9 NC_004684.1 + 22954 0.66 0.576972
Target:  5'- aGCUGGUCGacuaCGCCaccgggccggACGCcaacgaGGUGGCCGu -3'
miRNA:   3'- -CGACUAGCc---GUGG----------UGCGa-----CCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 60685 0.66 0.576972
Target:  5'- ----uUCGGCuuGCuCGCGCcgacGGUGGCCAg -3'
miRNA:   3'- cgacuAGCCG--UG-GUGCGa---CCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 37706 0.66 0.576972
Target:  5'- cGUUGAcgCGcGCACgCGCGguCUGGUcGGCCGc -3'
miRNA:   3'- -CGACUa-GC-CGUG-GUGC--GACCA-CCGGU- -5'
19142 3' -58.9 NC_004684.1 + 47662 0.66 0.576972
Target:  5'- cGCUcca-GGUGCCGCGCUcaccGaGUGGCCGu -3'
miRNA:   3'- -CGAcuagCCGUGGUGCGA----C-CACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 51504 0.66 0.576972
Target:  5'- cGCccugCGGCugCAcagggcCGCUGGcGGCCAc -3'
miRNA:   3'- -CGacuaGCCGugGU------GCGACCaCCGGU- -5'
19142 3' -58.9 NC_004684.1 + 1930 0.66 0.576972
Target:  5'- uGCcGGgccUGGUACCgGCGCacGGUGGCCGc -3'
miRNA:   3'- -CGaCUa--GCCGUGG-UGCGa-CCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 56485 0.66 0.576972
Target:  5'- aCUGcUCGGcCugUACGCgccgacccgGGUGGUCAc -3'
miRNA:   3'- cGACuAGCC-GugGUGCGa--------CCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 60531 0.66 0.576972
Target:  5'- gGCUGAUCu-CGCCGCGCccGGUG-CCGu -3'
miRNA:   3'- -CGACUAGccGUGGUGCGa-CCACcGGU- -5'
19142 3' -58.9 NC_004684.1 + 56364 0.66 0.576972
Target:  5'- aGCUGAUcgccCGGCACCGCucgguGCUGaUGGaCAu -3'
miRNA:   3'- -CGACUA----GCCGUGGUG-----CGACcACCgGU- -5'
19142 3' -58.9 NC_004684.1 + 18474 0.66 0.576972
Target:  5'- aGCUGGUgcugucggugucCGGCACCGCcaccGCUGGgcaguucaagcUGGCg- -3'
miRNA:   3'- -CGACUA------------GCCGUGGUG----CGACC-----------ACCGgu -5'
19142 3' -58.9 NC_004684.1 + 55716 0.66 0.575918
Target:  5'- aGCUGcuugcgCGGCggucacguuggccGCCGUGCUGGcgUGGCCGa -3'
miRNA:   3'- -CGACua----GCCG-------------UGGUGCGACC--ACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 1051 0.66 0.566452
Target:  5'- -aUGG-CGGCACCGguugUGCUGGcUGGCg- -3'
miRNA:   3'- cgACUaGCCGUGGU----GCGACC-ACCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.