miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19142 3' -58.9 NC_004684.1 + 11290 1.1 0.000474
Target:  5'- aGCUGAUCGGCACCACGCUGGUGGCCAc -3'
miRNA:   3'- -CGACUAGCCGUGGUGCGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 67019 0.77 0.113073
Target:  5'- cCUGAcCGGCACCACGaUGGccUGGCCAc -3'
miRNA:   3'- cGACUaGCCGUGGUGCgACC--ACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 27287 0.77 0.126052
Target:  5'- gGCUGAUCaGCACCcUGUUcGGUGGCCu -3'
miRNA:   3'- -CGACUAGcCGUGGuGCGA-CCACCGGu -5'
19142 3' -58.9 NC_004684.1 + 63851 0.76 0.129506
Target:  5'- cGCUG-UCGGUGCCACGUgcgcGGUGGCg- -3'
miRNA:   3'- -CGACuAGCCGUGGUGCGa---CCACCGgu -5'
19142 3' -58.9 NC_004684.1 + 5909 0.76 0.140399
Target:  5'- cGCUGAUCGcGCACgACcgGCUGGccgcgcUGGCCAc -3'
miRNA:   3'- -CGACUAGC-CGUGgUG--CGACC------ACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 16836 0.76 0.143827
Target:  5'- aGCgGGUCGcCGCCGCucuaccgcauuuuGCUGGUGGCCAg -3'
miRNA:   3'- -CGaCUAGCcGUGGUG-------------CGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 35616 0.75 0.151721
Target:  5'- cUUGcgCGGCAcuacuuuCCGCGCgUGGUGGCCGa -3'
miRNA:   3'- cGACuaGCCGU-------GGUGCG-ACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 30177 0.74 0.178275
Target:  5'- cGCc-GUCGGCGgCGaGCUGGUGGCCAc -3'
miRNA:   3'- -CGacUAGCCGUgGUgCGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 30975 0.74 0.19786
Target:  5'- gGCgUGGUCGGCACCguugagACGCUGaUGGCgCAg -3'
miRNA:   3'- -CG-ACUAGCCGUGG------UGCGACcACCG-GU- -5'
19142 3' -58.9 NC_004684.1 + 18562 0.73 0.20834
Target:  5'- cGCgacggCGGCcgaggucaagACCGCGCUGGUGGCUc -3'
miRNA:   3'- -CGacua-GCCG----------UGGUGCGACCACCGGu -5'
19142 3' -58.9 NC_004684.1 + 1240 0.73 0.210492
Target:  5'- cCUGGUCGGUcgcccgGCcccggcccagaugcgCugGCUGGUGGCCAu -3'
miRNA:   3'- cGACUAGCCG------UG---------------GugCGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 11345 0.73 0.219295
Target:  5'- cUUGA-CGGCGgccuccaggcCCACGgUGGUGGCCAg -3'
miRNA:   3'- cGACUaGCCGU----------GGUGCgACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 45239 0.73 0.224955
Target:  5'- uGCUGGUCaGGCccggcaGCCAgCGCUGGUcgcGGCCc -3'
miRNA:   3'- -CGACUAG-CCG------UGGU-GCGACCA---CCGGu -5'
19142 3' -58.9 NC_004684.1 + 13262 0.72 0.248844
Target:  5'- -gUGAcCGcCAgCGCGCUGGUGGCCGc -3'
miRNA:   3'- cgACUaGCcGUgGUGCGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 57867 0.72 0.268108
Target:  5'- aGCguccCGGCACgccagaccggugCugGCUGGUGGCCGg -3'
miRNA:   3'- -CGacuaGCCGUG------------GugCGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 42667 0.72 0.268108
Target:  5'- cGgUGGagGGCAUCACgGC-GGUGGCCAa -3'
miRNA:   3'- -CgACUagCCGUGGUG-CGaCCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 42183 0.71 0.274792
Target:  5'- aCUGcgCGGUgagcaguggGCCGuggaGCUGGUGGCCGa -3'
miRNA:   3'- cGACuaGCCG---------UGGUg---CGACCACCGGU- -5'
19142 3' -58.9 NC_004684.1 + 15531 0.71 0.281608
Target:  5'- cGCUGGagGcGCugauCCGCGUUGGUGGaCCGg -3'
miRNA:   3'- -CGACUagC-CGu---GGUGCGACCACC-GGU- -5'
19142 3' -58.9 NC_004684.1 + 24773 0.71 0.295642
Target:  5'- --aGAcCGGCACCGggcCGCUGGUcgauacGGCCAa -3'
miRNA:   3'- cgaCUaGCCGUGGU---GCGACCA------CCGGU- -5'
19142 3' -58.9 NC_004684.1 + 58386 0.71 0.295642
Target:  5'- -----aCGGCACCGCGCgUGGaGGCCu -3'
miRNA:   3'- cgacuaGCCGUGGUGCG-ACCaCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.