miRNA display CGI


Results 21 - 40 of 287 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 3' -61 NC_004684.1 + 57817 0.66 0.511753
Target:  5'- cCACGGaucagguCGGCC-ACGUGuuCGCgGCGc -3'
miRNA:   3'- cGUGCC-------GCCGGuUGCACugGCGgCGC- -5'
19143 3' -61 NC_004684.1 + 63694 0.66 0.50292
Target:  5'- aGCGCGGCGGCgCuGGCGaucucCUGCCaGCGu -3'
miRNA:   3'- -CGUGCCGCCG-G-UUGCacu--GGCGG-CGC- -5'
19143 3' -61 NC_004684.1 + 1804 0.66 0.50292
Target:  5'- cGUGCGGCucaugaccgaGGCCAugGcGGCUGaCCuGCGg -3'
miRNA:   3'- -CGUGCCG----------CCGGUugCaCUGGC-GG-CGC- -5'
19143 3' -61 NC_004684.1 + 51702 0.66 0.50292
Target:  5'- uGC-CGGUGGCgucgGUG-CCGCCGCu -3'
miRNA:   3'- -CGuGCCGCCGguugCACuGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 41690 0.66 0.50292
Target:  5'- uGUugGGCauGCCAgcugcgccacgcGCGUuGCCGCCGUa -3'
miRNA:   3'- -CGugCCGc-CGGU------------UGCAcUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 1141 0.66 0.50292
Target:  5'- cCACGGCauGCCgGGCGUG-CCGaCCGUGc -3'
miRNA:   3'- cGUGCCGc-CGG-UUGCACuGGC-GGCGC- -5'
19143 3' -61 NC_004684.1 + 5141 0.66 0.50292
Target:  5'- cGCAUGaGCGGgCAg---GACCaGCCGCGc -3'
miRNA:   3'- -CGUGC-CGCCgGUugcaCUGG-CGGCGC- -5'
19143 3' -61 NC_004684.1 + 42683 0.66 0.497068
Target:  5'- -gGCGGUGGCCAACcaguucaacgaucugGUcACCGgCGUGa -3'
miRNA:   3'- cgUGCCGCCGGUUG---------------CAcUGGCgGCGC- -5'
19143 3' -61 NC_004684.1 + 24731 0.66 0.493183
Target:  5'- aGCugGGCGugcugcGCCAGauuCGUGACCuGCUgGCa -3'
miRNA:   3'- -CGugCCGC------CGGUU---GCACUGG-CGG-CGc -5'
19143 3' -61 NC_004684.1 + 58603 0.66 0.493183
Target:  5'- uGCGCGGUgcuuugaucgacGGCC--CGUGGCggcuggUGCCGCGc -3'
miRNA:   3'- -CGUGCCG------------CCGGuuGCACUG------GCGGCGC- -5'
19143 3' -61 NC_004684.1 + 57614 0.66 0.493183
Target:  5'- uGCACGaGCgguacGGCCAGCcacccgGUGACC-UCGCGu -3'
miRNA:   3'- -CGUGC-CG-----CCGGUUG------CACUGGcGGCGC- -5'
19143 3' -61 NC_004684.1 + 37195 0.66 0.493183
Target:  5'- aCGCGcGCGGCCAGCugcugGUGugCGUgaGCu -3'
miRNA:   3'- cGUGC-CGCCGGUUG-----CACugGCGg-CGc -5'
19143 3' -61 NC_004684.1 + 60503 0.66 0.493183
Target:  5'- aGgACGGUGaCCAGCaUGAUCGaCCGCa -3'
miRNA:   3'- -CgUGCCGCcGGUUGcACUGGC-GGCGc -5'
19143 3' -61 NC_004684.1 + 40888 0.66 0.483535
Target:  5'- -aGCGGUGGUCAgcACGUGcUCGCCagGCa -3'
miRNA:   3'- cgUGCCGCCGGU--UGCACuGGCGG--CGc -5'
19143 3' -61 NC_004684.1 + 44289 0.66 0.483535
Target:  5'- uGCACGGCGucGCCGAacucggcacUGUucuuGCCGCCGUu -3'
miRNA:   3'- -CGUGCCGC--CGGUU---------GCAc---UGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 58991 0.66 0.483535
Target:  5'- aCACGGaacauGCCGuCGaGGCCGUCGCGg -3'
miRNA:   3'- cGUGCCgc---CGGUuGCaCUGGCGGCGC- -5'
19143 3' -61 NC_004684.1 + 8768 0.66 0.483535
Target:  5'- aGCGCGGCaccaGCCGccACG-GGCCGUCGa- -3'
miRNA:   3'- -CGUGCCGc---CGGU--UGCaCUGGCGGCgc -5'
19143 3' -61 NC_004684.1 + 1375 0.66 0.483535
Target:  5'- aCACccUGGCCGACGccaaGGCCGCCGUu -3'
miRNA:   3'- cGUGccGCCGGUUGCa---CUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 44236 0.66 0.483535
Target:  5'- aGCA-GGCucucGCCAAaguUGGCCGCCGCc -3'
miRNA:   3'- -CGUgCCGc---CGGUUgc-ACUGGCGGCGc -5'
19143 3' -61 NC_004684.1 + 57818 0.66 0.483535
Target:  5'- cCACGGCcuGGucCCGGCGgugcUGGCCGCCGg- -3'
miRNA:   3'- cGUGCCG--CC--GGUUGC----ACUGGCGGCgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.