miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19143 5' -55.2 NC_004684.1 + 37220 0.66 0.766129
Target:  5'- aGCuCGCcgcCGACGGCGUUGAuCGCCc -3'
miRNA:   3'- aCGcGUGau-GCUGUUGCGACU-GCGGa -5'
19143 5' -55.2 NC_004684.1 + 30211 0.66 0.766129
Target:  5'- cGCGCGCgucgAUGcuCGGCGCgacGugGCCc -3'
miRNA:   3'- aCGCGUGa---UGCu-GUUGCGa--CugCGGa -5'
19143 5' -55.2 NC_004684.1 + 21937 0.66 0.755973
Target:  5'- aGUGCGuCUGCGGCcugGUgaUGACGCCa -3'
miRNA:   3'- aCGCGU-GAUGCUGuugCG--ACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 46959 0.66 0.755973
Target:  5'- cGUGCACaGCGcCAG-GCUGauGCGCCa -3'
miRNA:   3'- aCGCGUGaUGCuGUUgCGAC--UGCGGa -5'
19143 5' -55.2 NC_004684.1 + 62635 0.66 0.755973
Target:  5'- cGCGCACgaaGGCGGCGU--AgGCCUg -3'
miRNA:   3'- aCGCGUGaugCUGUUGCGacUgCGGA- -5'
19143 5' -55.2 NC_004684.1 + 63364 0.66 0.755973
Target:  5'- aGCGCACcgaGCGGcCGACGCgccaGCCg -3'
miRNA:   3'- aCGCGUGa--UGCU-GUUGCGacugCGGa -5'
19143 5' -55.2 NC_004684.1 + 37092 0.66 0.749818
Target:  5'- gUGCGCgauGCUGCGGagAACGUUGAggagggcuggcgugcCGCCa -3'
miRNA:   3'- -ACGCG---UGAUGCUg-UUGCGACU---------------GCGGa -5'
19143 5' -55.2 NC_004684.1 + 8807 0.66 0.745692
Target:  5'- cGCGCAUgUACGA-GGCGCUGcgGCGCa- -3'
miRNA:   3'- aCGCGUG-AUGCUgUUGCGAC--UGCGga -5'
19143 5' -55.2 NC_004684.1 + 54236 0.66 0.745692
Target:  5'- gGUGCGCgucacGCGucaGCGACGCgaGGCGCUg -3'
miRNA:   3'- aCGCGUGa----UGC---UGUUGCGa-CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 10335 0.66 0.745692
Target:  5'- gGUGC-CUGCcACcGCGCUGGUGCCg -3'
miRNA:   3'- aCGCGuGAUGcUGuUGCGACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 6007 0.66 0.745692
Target:  5'- gGCGCACcauCGG--ACGCgGugGCCUu -3'
miRNA:   3'- aCGCGUGau-GCUguUGCGaCugCGGA- -5'
19143 5' -55.2 NC_004684.1 + 49409 0.66 0.745692
Target:  5'- aGCGCcaccaccuggaGCUugGACAugGUcuUGGUGCCg -3'
miRNA:   3'- aCGCG-----------UGAugCUGUugCG--ACUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 63588 0.66 0.744657
Target:  5'- cUGCGCGgcGCGGCGGugguuacCGCcucgGACGCCa -3'
miRNA:   3'- -ACGCGUgaUGCUGUU-------GCGa---CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 44941 0.66 0.742584
Target:  5'- gGCGaCGCUcAUGACAugugcccgucaaggACGCgcGACGCCa -3'
miRNA:   3'- aCGC-GUGA-UGCUGU--------------UGCGa-CUGCGGa -5'
19143 5' -55.2 NC_004684.1 + 53593 0.66 0.732158
Target:  5'- gGCGUugcggGCGACAccGCGCUGGaggcgcagguugguCGCCUg -3'
miRNA:   3'- aCGCGuga--UGCUGU--UGCGACU--------------GCGGA- -5'
19143 5' -55.2 NC_004684.1 + 45880 0.67 0.7248
Target:  5'- aUGUGCGCgcCGuCcACGCUGGCGgCg -3'
miRNA:   3'- -ACGCGUGauGCuGuUGCGACUGCgGa -5'
19143 5' -55.2 NC_004684.1 + 7877 0.67 0.7248
Target:  5'- gUGCGCAggcCUACGACG-CGCccggugcuccguUGGgGCCg -3'
miRNA:   3'- -ACGCGU---GAUGCUGUuGCG------------ACUgCGGa -5'
19143 5' -55.2 NC_004684.1 + 32383 0.67 0.7248
Target:  5'- cGgGUAC-ACGACGACGCg--UGCCUa -3'
miRNA:   3'- aCgCGUGaUGCUGUUGCGacuGCGGA- -5'
19143 5' -55.2 NC_004684.1 + 10319 0.67 0.7248
Target:  5'- aUGUGCGCgcCG-CAACGCaGGcCGCCa -3'
miRNA:   3'- -ACGCGUGauGCuGUUGCGaCU-GCGGa -5'
19143 5' -55.2 NC_004684.1 + 30499 0.67 0.7248
Target:  5'- aGCGUGggGCGGCuGGCGCUGGgGUCg -3'
miRNA:   3'- aCGCGUgaUGCUG-UUGCGACUgCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.