miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19147 3' -56 NC_004684.1 + 28900 0.66 0.760519
Target:  5'- ---gGCGUCGGuggccuugcugacgcCGGUGCCugccuuGUCGGCGu -3'
miRNA:   3'- gacaCGCAGUU---------------GCCACGG------UAGCCGCu -5'
19147 3' -56 NC_004684.1 + 64762 0.66 0.756495
Target:  5'- gCUGgugccagGCGUCggUcugGCUGUCGGCGAa -3'
miRNA:   3'- -GACa------CGCAGuuGccaCGGUAGCCGCU- -5'
19147 3' -56 NC_004684.1 + 22424 0.66 0.746351
Target:  5'- gCUGgGCcUCAACGccaucGCCGUCGGCGc -3'
miRNA:   3'- -GACaCGcAGUUGCca---CGGUAGCCGCu -5'
19147 3' -56 NC_004684.1 + 22892 0.66 0.746351
Target:  5'- gCUGcUGCG-CGuCGGUGCCAgcgacaaGGUGAc -3'
miRNA:   3'- -GAC-ACGCaGUuGCCACGGUag-----CCGCU- -5'
19147 3' -56 NC_004684.1 + 7841 0.66 0.746351
Target:  5'- -gGUGCGaCAACGGcGCgCGcUGGCGGu -3'
miRNA:   3'- gaCACGCaGUUGCCaCG-GUaGCCGCU- -5'
19147 3' -56 NC_004684.1 + 53263 0.66 0.746351
Target:  5'- ---cGCG-CucCGGUGUCAUCGGCu- -3'
miRNA:   3'- gacaCGCaGuuGCCACGGUAGCCGcu -5'
19147 3' -56 NC_004684.1 + 32253 0.66 0.746351
Target:  5'- aCUGcGCGUCGGaccuguugGCgGUCGGCGAa -3'
miRNA:   3'- -GACaCGCAGUUgcca----CGgUAGCCGCU- -5'
19147 3' -56 NC_004684.1 + 65010 0.66 0.746351
Target:  5'- ---gGCGUUggUGGUgugGCCAUaGGCGAc -3'
miRNA:   3'- gacaCGCAGuuGCCA---CGGUAgCCGCU- -5'
19147 3' -56 NC_004684.1 + 6851 0.66 0.725741
Target:  5'- ---gGUGUCGACGGcaCCGggcgCGGCGAg -3'
miRNA:   3'- gacaCGCAGUUGCCacGGUa---GCCGCU- -5'
19147 3' -56 NC_004684.1 + 25254 0.66 0.715297
Target:  5'- -cGUGCGU----GGUGgCGUCGGCGu -3'
miRNA:   3'- gaCACGCAguugCCACgGUAGCCGCu -5'
19147 3' -56 NC_004684.1 + 8159 0.66 0.715297
Target:  5'- -cGUGCGggUCuGCGG-GUCAcgcUCGGCGGa -3'
miRNA:   3'- gaCACGC--AGuUGCCaCGGU---AGCCGCU- -5'
19147 3' -56 NC_004684.1 + 27433 0.66 0.703717
Target:  5'- aUGgugGCGgCAuuggagcGCGGUGCCAccacCGGCGGu -3'
miRNA:   3'- gACa--CGCaGU-------UGCCACGGUa---GCCGCU- -5'
19147 3' -56 NC_004684.1 + 66602 0.67 0.694181
Target:  5'- -gGUGCaGgugagggccaUCAuucACGGUGCC-UCGGCGGu -3'
miRNA:   3'- gaCACG-C----------AGU---UGCCACGGuAGCCGCU- -5'
19147 3' -56 NC_004684.1 + 28579 0.67 0.694181
Target:  5'- -gGUGUG-CGGCGGcUGCCugccgGUCGGgGAa -3'
miRNA:   3'- gaCACGCaGUUGCC-ACGG-----UAGCCgCU- -5'
19147 3' -56 NC_004684.1 + 26578 0.67 0.694181
Target:  5'- cCUG-GCGcgCGGCGGUgugcgcggguucGCCAcCGGCGGc -3'
miRNA:   3'- -GACaCGCa-GUUGCCA------------CGGUaGCCGCU- -5'
19147 3' -56 NC_004684.1 + 63712 0.67 0.694181
Target:  5'- -cGUGCGggaGGCGGUGCCG--GGCc- -3'
miRNA:   3'- gaCACGCag-UUGCCACGGUagCCGcu -5'
19147 3' -56 NC_004684.1 + 30645 0.67 0.683532
Target:  5'- cCUGgcgGCGUCAGC---GCCGggaCGGCGAa -3'
miRNA:   3'- -GACa--CGCAGUUGccaCGGUa--GCCGCU- -5'
19147 3' -56 NC_004684.1 + 55964 0.67 0.683532
Target:  5'- ---cGCGcucCAGCGG-GUCAUCGGCGu -3'
miRNA:   3'- gacaCGCa--GUUGCCaCGGUAGCCGCu -5'
19147 3' -56 NC_004684.1 + 61674 0.67 0.673907
Target:  5'- gUGUGCGccugcacgccauuggCGuCGGUGCCGUgGGCa- -3'
miRNA:   3'- gACACGCa--------------GUuGCCACGGUAgCCGcu -5'
19147 3' -56 NC_004684.1 + 25443 0.67 0.671764
Target:  5'- gCUG-GCcuGUCGGacugcucCGGUGCCAUCaGCGAc -3'
miRNA:   3'- -GACaCG--CAGUU-------GCCACGGUAGcCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.