miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19147 5' -55.9 NC_004684.1 + 62199 0.66 0.774843
Target:  5'- gGUCGaGC-GCGUCcuuGAUCCCcucuucGGCGAUg -3'
miRNA:   3'- aCAGCaCGuUGCAG---CUAGGG------CCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 64999 0.66 0.774843
Target:  5'- cGaCGUGC-ACGcCGcaCCCGGCGAa -3'
miRNA:   3'- aCaGCACGuUGCaGCuaGGGCCGCUg -5'
19147 5' -55.9 NC_004684.1 + 14487 0.66 0.774843
Target:  5'- gGUUGccgGUAccACGcCGGUCgCCGGUGGCa -3'
miRNA:   3'- aCAGCa--CGU--UGCaGCUAG-GGCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 1216 0.66 0.774843
Target:  5'- cGUCGa-CuuCGUCGGcCUCGGCGGCc -3'
miRNA:   3'- aCAGCacGuuGCAGCUaGGGCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 64765 0.66 0.774843
Target:  5'- ---gGUGCcaGGCGUCGGUCUggcuguCGGCGAa -3'
miRNA:   3'- acagCACG--UUGCAGCUAGG------GCCGCUg -5'
19147 5' -55.9 NC_004684.1 + 18847 0.66 0.774843
Target:  5'- gGUCGgGuCGugGUCGGUgaCCgGGUGGCc -3'
miRNA:   3'- aCAGCaC-GUugCAGCUA--GGgCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 14834 0.66 0.764967
Target:  5'- cGcCGUGguGCGUCGccCCCGaUGACu -3'
miRNA:   3'- aCaGCACguUGCAGCuaGGGCcGCUG- -5'
19147 5' -55.9 NC_004684.1 + 60280 0.66 0.764967
Target:  5'- gUGgCGguUGCGugGccCGGUCCuCGGCGGCc -3'
miRNA:   3'- -ACaGC--ACGUugCa-GCUAGG-GCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 60596 0.66 0.764967
Target:  5'- cGUCGUaGUGGcCGUCGuccagugCaCCGGCGAUg -3'
miRNA:   3'- aCAGCA-CGUU-GCAGCua-----G-GGCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 26364 0.66 0.76098
Target:  5'- cGUCGggcaacggcaccgGCAACGUCGG---CGGCGAUc -3'
miRNA:   3'- aCAGCa------------CGUUGCAGCUaggGCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 18154 0.66 0.754962
Target:  5'- cUGUgGgGCGACGUgcCGAcgCCCGGCccGGCa -3'
miRNA:   3'- -ACAgCaCGUUGCA--GCUa-GGGCCG--CUG- -5'
19147 5' -55.9 NC_004684.1 + 55167 0.66 0.754962
Target:  5'- cGUCGgGCGgcACGUaccgGAaCCCGGUGAUg -3'
miRNA:   3'- aCAGCaCGU--UGCAg---CUaGGGCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 27144 0.66 0.754962
Target:  5'- cGaCGUGCuggGCGauUCGAUCaccagcuaCGGCGGCg -3'
miRNA:   3'- aCaGCACGu--UGC--AGCUAGg-------GCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 55491 0.66 0.744836
Target:  5'- gGUgGUGCcgcgcACGUUGaAUCCCGGUGu- -3'
miRNA:   3'- aCAgCACGu----UGCAGC-UAGGGCCGCug -5'
19147 5' -55.9 NC_004684.1 + 51119 0.66 0.744836
Target:  5'- -----cGCcGCGUCGggCCCGGCG-Cg -3'
miRNA:   3'- acagcaCGuUGCAGCuaGGGCCGCuG- -5'
19147 5' -55.9 NC_004684.1 + 20180 0.66 0.734602
Target:  5'- -uUCGacGCGcACGUCGGggugUCUGGCGACa -3'
miRNA:   3'- acAGCa-CGU-UGCAGCUa---GGGCCGCUG- -5'
19147 5' -55.9 NC_004684.1 + 45306 0.66 0.734602
Target:  5'- cUGUCGUugGCGGCGcgugCGGugUCCCGGUagccaGACu -3'
miRNA:   3'- -ACAGCA--CGUUGCa---GCU--AGGGCCG-----CUG- -5'
19147 5' -55.9 NC_004684.1 + 40296 0.66 0.72427
Target:  5'- cGUCGU-UggUGUCGAUggcguagcgCCCGGCaGGCa -3'
miRNA:   3'- aCAGCAcGuuGCAGCUA---------GGGCCG-CUG- -5'
19147 5' -55.9 NC_004684.1 + 28820 0.67 0.71385
Target:  5'- aUGUUGggguccgGCGAC-UCGAUUgCGGCGAa -3'
miRNA:   3'- -ACAGCa------CGUUGcAGCUAGgGCCGCUg -5'
19147 5' -55.9 NC_004684.1 + 65086 0.67 0.710709
Target:  5'- cGaCGUGCAcggcggucagcaccGCGUCGuggCCCaggcuGGCGGCa -3'
miRNA:   3'- aCaGCACGU--------------UGCAGCua-GGG-----CCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.