miRNA display CGI


Results 21 - 40 of 395 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 3' -63.7 NC_004684.1 + 39890 0.66 0.368963
Target:  5'- aGCcuCUGGcCCGCCGUUcacuguaaucgGCCAUGgACCu -3'
miRNA:   3'- -CGucGACC-GGCGGCGG-----------CGGUGCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 47638 0.66 0.368963
Target:  5'- cCGGCaGGCCGCgcagguacugcaCGCUccagguGCCGCGCucACCg -3'
miRNA:   3'- cGUCGaCCGGCG------------GCGG------CGGUGCG--UGG- -5'
19149 3' -63.7 NC_004684.1 + 26845 0.66 0.368963
Target:  5'- cCAGCUccuggaGGUCGCggagGUCGCCAC-CGCCg -3'
miRNA:   3'- cGUCGA------CCGGCGg---CGGCGGUGcGUGG- -5'
19149 3' -63.7 NC_004684.1 + 65847 0.66 0.368963
Target:  5'- gGCGGUugugggGGCCGCUGgUGCCACcucggagggguuGaCGCCg -3'
miRNA:   3'- -CGUCGa-----CCGGCGGCgGCGGUG------------C-GUGG- -5'
19149 3' -63.7 NC_004684.1 + 35093 0.66 0.368963
Target:  5'- cCGGCgucaGGCacagCGCCGagCGCCAaUGCACCu -3'
miRNA:   3'- cGUCGa---CCG----GCGGCg-GCGGU-GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 42856 0.66 0.368963
Target:  5'- cGCGGCccGGCaCaCCGCCGUagaugGCACCg -3'
miRNA:   3'- -CGUCGa-CCG-GcGGCGGCGgug--CGUGG- -5'
19149 3' -63.7 NC_004684.1 + 49103 0.66 0.368963
Target:  5'- aGguGCcacaGGUCGCCGUCGgCgucggccuggaACGUACCg -3'
miRNA:   3'- -CguCGa---CCGGCGGCGGCgG-----------UGCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 42026 0.66 0.366534
Target:  5'- gGC-GCUgaccggguccaucaGGCCGCCGCCaagGCCACcggggaggcCGCCa -3'
miRNA:   3'- -CGuCGA--------------CCGGCGGCGG---CGGUGc--------GUGG- -5'
19149 3' -63.7 NC_004684.1 + 40448 0.66 0.364116
Target:  5'- aGCGGUgcccaGGCgGCCGCCuGCuCGggggucucggcggucUGCGCCg -3'
miRNA:   3'- -CGUCGa----CCGgCGGCGG-CG-GU---------------GCGUGG- -5'
19149 3' -63.7 NC_004684.1 + 15750 0.66 0.364116
Target:  5'- aGCGaCUGGCCGCguacaccgaaaggugCGCCGa-GCGCgGCCa -3'
miRNA:   3'- -CGUcGACCGGCG---------------GCGGCggUGCG-UGG- -5'
19149 3' -63.7 NC_004684.1 + 49225 0.66 0.360909
Target:  5'- cGguGCcgGGCCgGgCGUCGgCACGuCGCCc -3'
miRNA:   3'- -CguCGa-CCGG-CgGCGGCgGUGC-GUGG- -5'
19149 3' -63.7 NC_004684.1 + 31166 0.66 0.360909
Target:  5'- cCAGC-GGUCucgGCgGUgGCCACGCugCg -3'
miRNA:   3'- cGUCGaCCGG---CGgCGgCGGUGCGugG- -5'
19149 3' -63.7 NC_004684.1 + 46405 0.66 0.360909
Target:  5'- cGCAGgaucgGGCCGaccugCGCCGCCGCuCcgACCg -3'
miRNA:   3'- -CGUCga---CCGGCg----GCGGCGGUGcG--UGG- -5'
19149 3' -63.7 NC_004684.1 + 20802 0.66 0.360909
Target:  5'- cGCcGCc-GUCGCCGCCGUCGaGCGCg -3'
miRNA:   3'- -CGuCGacCGGCGGCGGCGGUgCGUGg -5'
19149 3' -63.7 NC_004684.1 + 60963 0.66 0.360909
Target:  5'- -aAGCgcgaaGGCguucaCGCCGCCGCCGaGCugUa -3'
miRNA:   3'- cgUCGa----CCG-----GCGGCGGCGGUgCGugG- -5'
19149 3' -63.7 NC_004684.1 + 64152 0.66 0.360909
Target:  5'- aGCAGCgUGGUCuCCGCguugaggucgUGCuCGCGCGCg -3'
miRNA:   3'- -CGUCG-ACCGGcGGCG----------GCG-GUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 27943 0.66 0.360909
Target:  5'- cCAGgUaGCCGCaCGCCucgGCCugGgGCCa -3'
miRNA:   3'- cGUCgAcCGGCG-GCGG---CGGugCgUGG- -5'
19149 3' -63.7 NC_004684.1 + 7152 0.66 0.360909
Target:  5'- aGCAGUga-CCGCCaCCgaacaGCCGCGCACg -3'
miRNA:   3'- -CGUCGaccGGCGGcGG-----CGGUGCGUGg -5'
19149 3' -63.7 NC_004684.1 + 46288 0.66 0.360909
Target:  5'- cGCGGC-GGCCGagcgCGuuGCgGCGCuuggcgugcGCCa -3'
miRNA:   3'- -CGUCGaCCGGCg---GCggCGgUGCG---------UGG- -5'
19149 3' -63.7 NC_004684.1 + 58164 0.66 0.352978
Target:  5'- gGCAGCagguucggguccUGGCCcaCC-CgGUCACGCGCCc -3'
miRNA:   3'- -CGUCG------------ACCGGc-GGcGgCGGUGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.