miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19149 5' -53.9 NC_004684.1 + 28512 0.66 0.777335
Target:  5'- -cGCUguccaGCGUGGCGGCGuuGAAC-CGCg -3'
miRNA:   3'- caCGA-----CGCGUCGCCGUugUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 29663 0.66 0.777335
Target:  5'- cGUGCuccUGCGC-GCGGCcgacCAGAC-CGCg -3'
miRNA:   3'- -CACG---ACGCGuCGCCGuu--GUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 39308 0.66 0.767071
Target:  5'- gGUGCgggucGCGCGGCGGCcc--GGC-CACa -3'
miRNA:   3'- -CACGa----CGCGUCGCCGuuguUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 36877 0.66 0.767071
Target:  5'- aUGCUGguggcCGUGGuCGGCAACcAGCUCGg -3'
miRNA:   3'- cACGAC-----GCGUC-GCCGUUGuUUGAGUg -5'
19149 5' -53.9 NC_004684.1 + 13548 0.66 0.767071
Target:  5'- -aGCUGCGCcuGGCGGCcAUcgGCUacuGCg -3'
miRNA:   3'- caCGACGCG--UCGCCGuUGuuUGAg--UG- -5'
19149 5' -53.9 NC_004684.1 + 36215 0.66 0.767071
Target:  5'- -aGCUGCGCAGCguGGCcACcgccgAGAC-CGCu -3'
miRNA:   3'- caCGACGCGUCG--CCGuUG-----UUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 43451 0.66 0.767071
Target:  5'- gGUGCgGCGgGcGCGGCAGCAggUgcgGCg -3'
miRNA:   3'- -CACGaCGCgU-CGCCGUUGUuuGag-UG- -5'
19149 5' -53.9 NC_004684.1 + 7408 0.66 0.760844
Target:  5'- cUGCgGCGCGuGCGGCAagguccgggugcggcACGAGCgccgccagCACa -3'
miRNA:   3'- cACGaCGCGU-CGCCGU---------------UGUUUGa-------GUG- -5'
19149 5' -53.9 NC_004684.1 + 43808 0.66 0.756664
Target:  5'- gGUGgUgGCGC-GCGcGCAGCGAGgUCGCc -3'
miRNA:   3'- -CACgA-CGCGuCGC-CGUUGUUUgAGUG- -5'
19149 5' -53.9 NC_004684.1 + 29575 0.66 0.756664
Target:  5'- -cGCUGUGUAG-GGCGcgccgugccccACAcACUCACc -3'
miRNA:   3'- caCGACGCGUCgCCGU-----------UGUuUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 37469 0.67 0.746125
Target:  5'- -cGCUGCGCAGCuccauaaGCGagaGCAAAC-CAUa -3'
miRNA:   3'- caCGACGCGUCGc------CGU---UGUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 38279 0.67 0.746125
Target:  5'- cGUGCUggucugGCGCAGCucacGGCuccaggcCAGGCUCAUc -3'
miRNA:   3'- -CACGA------CGCGUCG----CCGuu-----GUUUGAGUG- -5'
19149 5' -53.9 NC_004684.1 + 12088 0.67 0.746125
Target:  5'- gGUGCUGgccCGC-GCGGCGGCca--UCACg -3'
miRNA:   3'- -CACGAC---GCGuCGCCGUUGuuugAGUG- -5'
19149 5' -53.9 NC_004684.1 + 58047 0.67 0.735466
Target:  5'- -aGCUGCGUcuGGUGcGCcACGAGCUgACc -3'
miRNA:   3'- caCGACGCG--UCGC-CGuUGUUUGAgUG- -5'
19149 5' -53.9 NC_004684.1 + 12967 0.67 0.735466
Target:  5'- ----cGCGC-GCGGCGugAGGCUCGa -3'
miRNA:   3'- cacgaCGCGuCGCCGUugUUUGAGUg -5'
19149 5' -53.9 NC_004684.1 + 48724 0.67 0.735466
Target:  5'- -cGUcGCGCccAGCGGCGGCAcgauGgUCACg -3'
miRNA:   3'- caCGaCGCG--UCGCCGUUGUu---UgAGUG- -5'
19149 5' -53.9 NC_004684.1 + 26905 0.67 0.735466
Target:  5'- gGUGCUgGCGCAcuCGGC-GCAGAC-CGCc -3'
miRNA:   3'- -CACGA-CGCGUc-GCCGuUGUUUGaGUG- -5'
19149 5' -53.9 NC_004684.1 + 49720 0.67 0.7247
Target:  5'- -gGCgGCGCGGCGuucaaacucaGCGGCAcGCUCGg -3'
miRNA:   3'- caCGaCGCGUCGC----------CGUUGUuUGAGUg -5'
19149 5' -53.9 NC_004684.1 + 4234 0.67 0.7247
Target:  5'- -cGcCUGCGCGGCGcGCAGgAGccgcACUCGg -3'
miRNA:   3'- caC-GACGCGUCGC-CGUUgUU----UGAGUg -5'
19149 5' -53.9 NC_004684.1 + 45881 0.67 0.713839
Target:  5'- uGUGC-GCGCcguccacgcuGGCGGCGaaACGAuguuggugcGCUCGCg -3'
miRNA:   3'- -CACGaCGCG----------UCGCCGU--UGUU---------UGAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.