miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19150 3' -53.5 NC_004684.1 + 65343 0.65 0.856733
Target:  5'- uGGCGCUGG-CCGUaguccacgaacaggGCGCugGcCUGGu -3'
miRNA:   3'- uUCGUGACCuGGUA--------------UGCGugUuGGCC- -5'
19150 3' -53.5 NC_004684.1 + 17560 0.65 0.856733
Target:  5'- -cGC-CUGGACgagGUGCGCGCAcuguaaggugcaccGCUGGa -3'
miRNA:   3'- uuCGuGACCUGg--UAUGCGUGU--------------UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 16275 0.66 0.85421
Target:  5'- -cGCGCcGGGCCcgACGCggcGCuucacugucguaucaGACCGGg -3'
miRNA:   3'- uuCGUGaCCUGGuaUGCG---UG---------------UUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 7508 0.66 0.850813
Target:  5'- -cGCGCUGG-CCGccGCGCGCGugacCCGa -3'
miRNA:   3'- uuCGUGACCuGGUa-UGCGUGUu---GGCc -5'
19150 3' -53.5 NC_004684.1 + 8934 0.66 0.850813
Target:  5'- -cGCGCUGG-CCucaGCGgGCAGUCGGg -3'
miRNA:   3'- uuCGUGACCuGGua-UGCgUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 2128 0.66 0.84216
Target:  5'- cGGaGCUGGACC-UGCGUGCGuUCGGc -3'
miRNA:   3'- uUCgUGACCUGGuAUGCGUGUuGGCC- -5'
19150 3' -53.5 NC_004684.1 + 530 0.66 0.84216
Target:  5'- aAGGC-CUGGACCcgGCGaaaGGCCuGGa -3'
miRNA:   3'- -UUCGuGACCUGGuaUGCgugUUGG-CC- -5'
19150 3' -53.5 NC_004684.1 + 3262 0.66 0.84216
Target:  5'- uGGC-CUGG-CCGgacaucguggACGCACugcuGCCGGa -3'
miRNA:   3'- uUCGuGACCuGGUa---------UGCGUGu---UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 5227 0.66 0.84216
Target:  5'- gAGGCcaUGGugUccGCGCGCGGCCGa -3'
miRNA:   3'- -UUCGugACCugGuaUGCGUGUUGGCc -5'
19150 3' -53.5 NC_004684.1 + 5104 0.66 0.84216
Target:  5'- cGGCGCUGGAgCA-GCGcCugGACCu- -3'
miRNA:   3'- uUCGUGACCUgGUaUGC-GugUUGGcc -5'
19150 3' -53.5 NC_004684.1 + 48268 0.66 0.84216
Target:  5'- -cGUugUcgucGGccACCAUGCGCACGucccACCGGc -3'
miRNA:   3'- uuCGugA----CC--UGGUAUGCGUGU----UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 17261 0.66 0.838636
Target:  5'- cGGCGCUGGuCCugcaacugcucggcgGCGCugGuuuucugGCCGGg -3'
miRNA:   3'- uUCGUGACCuGGua-------------UGCGugU-------UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 31171 0.66 0.833284
Target:  5'- cGGUGCUGGGCCAgauCGgGCAagGCCu- -3'
miRNA:   3'- uUCGUGACCUGGUau-GCgUGU--UGGcc -5'
19150 3' -53.5 NC_004684.1 + 1443 0.66 0.833284
Target:  5'- cAGGCcgaGCUGGACCAccUGguCGagACCGGg -3'
miRNA:   3'- -UUCG---UGACCUGGUauGCguGU--UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 3607 0.66 0.832384
Target:  5'- -cGCACUGGGCCGccgaacacgagUggccgaaGCGCGCcACCuGGg -3'
miRNA:   3'- uuCGUGACCUGGU-----------A-------UGCGUGuUGG-CC- -5'
19150 3' -53.5 NC_004684.1 + 1077 0.66 0.824194
Target:  5'- cGGCGCUGGAcgugaucggugaCCAgGCcgcgacccgGCGCAACUGGc -3'
miRNA:   3'- uUCGUGACCU------------GGUaUG---------CGUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 18647 0.66 0.824194
Target:  5'- uGGCGCUGGACauggccUGC-CACAucgccACCGGc -3'
miRNA:   3'- uUCGUGACCUGgu----AUGcGUGU-----UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 7788 0.66 0.824194
Target:  5'- cGAGCAUUGGugCGcgggAUGU--GACCGGg -3'
miRNA:   3'- -UUCGUGACCugGUa---UGCGugUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 61536 0.66 0.821427
Target:  5'- cAGGCGCUGGcguGCCGcugguugguccgggUGCggcagcacucGCGCAGCUGGg -3'
miRNA:   3'- -UUCGUGACC---UGGU--------------AUG----------CGUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 57206 0.66 0.821427
Target:  5'- uGGCGCUGGGCgGUcuggaacuccucgaGCGCgguggccagcgGCGGCUGGc -3'
miRNA:   3'- uUCGUGACCUGgUA--------------UGCG-----------UGUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.