miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19150 3' -53.5 NC_004684.1 + 530 0.66 0.84216
Target:  5'- aAGGC-CUGGACCcgGCGaaaGGCCuGGa -3'
miRNA:   3'- -UUCGuGACCUGGuaUGCgugUUGG-CC- -5'
19150 3' -53.5 NC_004684.1 + 1077 0.66 0.824194
Target:  5'- cGGCGCUGGAcgugaucggugaCCAgGCcgcgacccgGCGCAACUGGc -3'
miRNA:   3'- uUCGUGACCU------------GGUaUG---------CGUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 1187 0.67 0.775889
Target:  5'- cAGGCGCUGGACUAcUACgGCA-AGCgCGGc -3'
miRNA:   3'- -UUCGUGACCUGGU-AUG-CGUgUUG-GCC- -5'
19150 3' -53.5 NC_004684.1 + 1250 0.67 0.765732
Target:  5'- cGGuCACUGGACCA-ACG-AC-ACCGGc -3'
miRNA:   3'- uUC-GUGACCUGGUaUGCgUGuUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 1269 0.69 0.657342
Target:  5'- -uGCGCUGGcuggugGCCAUguuccgguacGCGCGCGacgcgugGCCGGa -3'
miRNA:   3'- uuCGUGACC------UGGUA----------UGCGUGU-------UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 1443 0.66 0.833284
Target:  5'- cAGGCcgaGCUGGACCAccUGguCGagACCGGg -3'
miRNA:   3'- -UUCG---UGACCUGGUauGCguGU--UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 1606 0.75 0.344764
Target:  5'- cGGCAUcGGucGCCGUGCGCGCGcccACCGGc -3'
miRNA:   3'- uUCGUGaCC--UGGUAUGCGUGU---UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 1622 0.67 0.795739
Target:  5'- cGGCAcCUGcACCG---GCGCAACCGGg -3'
miRNA:   3'- uUCGU-GACcUGGUaugCGUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 1753 0.67 0.785895
Target:  5'- uAGguCgGGACCGgagcUGCGCGCGugGCUGGa -3'
miRNA:   3'- uUCguGaCCUGGU----AUGCGUGU--UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 2007 0.69 0.66947
Target:  5'- uGGGCGCUGGACCGccccgACGUugAccagGCCa- -3'
miRNA:   3'- -UUCGUGACCUGGUa----UGCGugU----UGGcc -5'
19150 3' -53.5 NC_004684.1 + 2076 0.67 0.795739
Target:  5'- uGGCGCUGG-CCGUgGUGCACAGCgaGGc -3'
miRNA:   3'- uUCGUGACCuGGUA-UGCGUGUUGg-CC- -5'
19150 3' -53.5 NC_004684.1 + 2128 0.66 0.84216
Target:  5'- cGGaGCUGGACC-UGCGUGCGuUCGGc -3'
miRNA:   3'- uUCgUGACCUGGuAUGCGUGUuGGCC- -5'
19150 3' -53.5 NC_004684.1 + 2288 0.69 0.680458
Target:  5'- cAGC-CUGGGCCAcgACGCGguGCUGa -3'
miRNA:   3'- uUCGuGACCUGGUa-UGCGUguUGGCc -5'
19150 3' -53.5 NC_004684.1 + 2946 0.67 0.765732
Target:  5'- cGAGCACcGaGGCCAUcgGCGCGCuGCUGu -3'
miRNA:   3'- -UUCGUGaC-CUGGUA--UGCGUGuUGGCc -5'
19150 3' -53.5 NC_004684.1 + 3262 0.66 0.84216
Target:  5'- uGGC-CUGG-CCGgacaucguggACGCACugcuGCCGGa -3'
miRNA:   3'- uUCGuGACCuGGUa---------UGCGUGu---UGGCC- -5'
19150 3' -53.5 NC_004684.1 + 3495 0.67 0.805411
Target:  5'- cGGUAcCUGGACCAccugGCACcGCUGGg -3'
miRNA:   3'- uUCGU-GACCUGGUaug-CGUGuUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 3607 0.66 0.832384
Target:  5'- -cGCACUGGGCCGccgaacacgagUggccgaaGCGCGCcACCuGGg -3'
miRNA:   3'- uuCGUGACCUGGU-----------A-------UGCGUGuUGG-CC- -5'
19150 3' -53.5 NC_004684.1 + 4433 0.69 0.647398
Target:  5'- -cGCGC-GGGCC-UGCugGCGCAGCUGGa -3'
miRNA:   3'- uuCGUGaCCUGGuAUG--CGUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 4490 0.66 0.8149
Target:  5'- aGGGC-CUGGcccGCCGUggcaACgGCAUGGCCGGg -3'
miRNA:   3'- -UUCGuGACC---UGGUA----UG-CGUGUUGGCC- -5'
19150 3' -53.5 NC_004684.1 + 4726 0.68 0.745014
Target:  5'- cGGC-CaGGACCucGCGCACGGCCa- -3'
miRNA:   3'- uUCGuGaCCUGGuaUGCGUGUUGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.