miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19150 5' -61.7 NC_004684.1 + 2131 0.66 0.457886
Target:  5'- aGCuGGAccuGCGUGCGUUcggcgcgucGGUGAacUCGGCg -3'
miRNA:   3'- gCG-CCU---CGCGCGCGA---------CCACU--AGCCGa -5'
19150 5' -61.7 NC_004684.1 + 54126 0.66 0.448539
Target:  5'- gGCGGccaccaGCGCGCUGGcGGUCacGGCc -3'
miRNA:   3'- gCGCCucg---CGCGCGACCaCUAG--CCGa -5'
19150 5' -61.7 NC_004684.1 + 64866 0.66 0.448539
Target:  5'- uGgGGGGUGCGCGUUGuccGGUCGcGCc -3'
miRNA:   3'- gCgCCUCGCGCGCGACca-CUAGC-CGa -5'
19150 5' -61.7 NC_004684.1 + 61689 0.66 0.448539
Target:  5'- gGCGcGAGgGCGCGCUGcuccacCGGCg -3'
miRNA:   3'- gCGC-CUCgCGCGCGACcacua-GCCGa -5'
19150 5' -61.7 NC_004684.1 + 54269 0.66 0.448539
Target:  5'- gCGUGGAGaagcuGcCGCGCUGGccggugGggCGGCg -3'
miRNA:   3'- -GCGCCUCg----C-GCGCGACCa-----CuaGCCGa -5'
19150 5' -61.7 NC_004684.1 + 44430 0.66 0.439299
Target:  5'- gGCGGcguuGGCGCGCuuCUGGccuUCGGCg -3'
miRNA:   3'- gCGCC----UCGCGCGc-GACCacuAGCCGa -5'
19150 5' -61.7 NC_004684.1 + 49756 0.66 0.439299
Target:  5'- -aCGGAGCGCaccaGCGCgGGUGAUCu--- -3'
miRNA:   3'- gcGCCUCGCG----CGCGaCCACUAGccga -5'
19150 5' -61.7 NC_004684.1 + 55582 0.66 0.421151
Target:  5'- aGCGGcGCGCucGCGCccuucuccacggUGGccUGGUCGGCc -3'
miRNA:   3'- gCGCCuCGCG--CGCG------------ACC--ACUAGCCGa -5'
19150 5' -61.7 NC_004684.1 + 11284 0.66 0.421151
Target:  5'- gCGCGGAGCugaucgGCaccaCGCUGGUGGccaccgcugccuUUGGCg -3'
miRNA:   3'- -GCGCCUCG------CGc---GCGACCACU------------AGCCGa -5'
19150 5' -61.7 NC_004684.1 + 43456 0.66 0.412248
Target:  5'- gGCGG-GCGCGgcaGCaGGUGcggCGGCa -3'
miRNA:   3'- gCGCCuCGCGCg--CGaCCACua-GCCGa -5'
19150 5' -61.7 NC_004684.1 + 22362 0.66 0.409599
Target:  5'- gGCGGcGGCGguCGCGCUggcGGUGGacgugcaggcggcgUCGGCg -3'
miRNA:   3'- gCGCC-UCGC--GCGCGA---CCACU--------------AGCCGa -5'
19150 5' -61.7 NC_004684.1 + 55981 0.67 0.403462
Target:  5'- aGUGG-GCGgcCGgGUaGGUGGUCGGCg -3'
miRNA:   3'- gCGCCuCGC--GCgCGaCCACUAGCCGa -5'
19150 5' -61.7 NC_004684.1 + 29465 0.67 0.403462
Target:  5'- aGCaGGGCGUGCauGCUGGUGAgCuGCa -3'
miRNA:   3'- gCGcCUCGCGCG--CGACCACUaGcCGa -5'
19150 5' -61.7 NC_004684.1 + 65756 0.67 0.394796
Target:  5'- uCGCGGGcguuggccGcCGCGCGCcGGUGggCGcGCg -3'
miRNA:   3'- -GCGCCU--------C-GCGCGCGaCCACuaGC-CGa -5'
19150 5' -61.7 NC_004684.1 + 6771 0.67 0.394796
Target:  5'- uGCGcauGGGCGaCGUGCgccgGGUGAcCGGCc -3'
miRNA:   3'- gCGC---CUCGC-GCGCGa---CCACUaGCCGa -5'
19150 5' -61.7 NC_004684.1 + 29527 0.67 0.386251
Target:  5'- -aCGGAuCGUGCGCcaaUGGUGcgCGGCc -3'
miRNA:   3'- gcGCCUcGCGCGCG---ACCACuaGCCGa -5'
19150 5' -61.7 NC_004684.1 + 37528 0.67 0.386251
Target:  5'- gGCauGAGCuGCGCGaUGGUGAcCGGCg -3'
miRNA:   3'- gCGc-CUCG-CGCGCgACCACUaGCCGa -5'
19150 5' -61.7 NC_004684.1 + 15530 0.67 0.386251
Target:  5'- gCGCuGGAgGCGCugauccGCGUUGGUGGacCGGCg -3'
miRNA:   3'- -GCG-CCU-CGCG------CGCGACCACUa-GCCGa -5'
19150 5' -61.7 NC_004684.1 + 15829 0.67 0.381183
Target:  5'- cCGCGcAGCGCGCaCUggcgcagagcgacaaGGUGcUCGGCUa -3'
miRNA:   3'- -GCGCcUCGCGCGcGA---------------CCACuAGCCGA- -5'
19150 5' -61.7 NC_004684.1 + 11438 0.67 0.377829
Target:  5'- cCGCuGGAGCGCgGCGUcGGc-GUCGGCc -3'
miRNA:   3'- -GCG-CCUCGCG-CGCGaCCacUAGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.